DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SoxN and gei-3

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001076772.1 Gene:gei-3 / 184597 WormBaseID:WBGene00001560 Length:1405 Species:Caenorhabditis elegans


Alignment Length:690 Identity:128/690 - (18%)
Similarity:207/690 - (30%) Gaps:325/690 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 IAASQSPNPLSSLQSSMANTLNGSQVGQQQ-------QQQQQQQSSPLHSSSELS---------- 114
            :.::.|.||..|..:...:|.  |:.|:..       .|.|.|||:..:||:||:          
 Worm   710 LTSTGSSNPNGSSSNFQIHTT--SRSGESNVTPTSGGDQNQNQQSNSRNSSAELAGCDMSQELSV 772

  Fly   115 ----------PTQ-SSIGS---HHMTSPVSHQQHTQQQQHGQQQHLGAGSALSSLTGGSSNNNNN 165
                      |:| |||||   ....|||..:.:...:|...:..:.....:.     .|.....
 Worm   773 ETSDAGPPTLPSQPSSIGSSVNSAFRSPVKIEPNDDYEQSSVKDVMDVKPEVF-----QSAKERR 832

  Fly   166 SATANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFID 230
            .:..:.|:.|   |:|||||||::|:..|..:....|...|..:||.||..|..|:..:|..:..
 Worm   833 RSKVSANEPH---VRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHK 894

  Fly   231 EAKRLRAVHMKEHPDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRVQGQPGQ 295
            .|.:::..|.|.|||:|:          .||||                        ::     :
 Worm   895 LATQVKEAHFKAHPDWKW----------STKEK------------------------KI-----K 920

  Fly   296 NQSLNGSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAYQTSYMGQHYA 360
            ::|||           ....|....:..::..:                     .:||       
 Worm   921 SESLN-----------TTPVALTPLKNKVFDFD---------------------IRTS------- 946

  Fly   361 AQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQPGSPSPYGGSSLQQQPGSPTPYGGGGGGGGQ 425
               .|:...:.:                |::|..|.:|...|.|:.:                 .
 Worm   947 ---DDLAKSFVD----------------GTALLSPMTPMTPGASAFR-----------------H 975

  Fly   426 VSCQSHSPSDSSIKSEP----VSPSPSAIALNNNNNINNNHIMKREYSSAAAAAAAAAAAAAAGG 486
            :|.:..:.|.:|....|    :|||.|||::|                :|:..::.|.::|    
 Worm   976 LSSRDSTQSSTSSFDFPGLPLMSPSLSAISMN----------------TASITSSPALSSA---- 1020

  Fly   487 GELNHLMNMYHLPDEQRHLLHYQTDSPDLQQQHQSMQQQQQHLPQQHLSQQHQQIPQQHHTMQQQ 551
                                     :|..|...:|::|                           
 Worm  1021 -------------------------TPSFQFDFESLKQ--------------------------- 1033

  Fly   552 QQQHHLQHQQSLRAMAPLAHMXEMASAYGAAG-----------SSVSVSPP----LPPY------ 595
                                        |.||           :.|:.|.|    ||.|      
 Worm  1034 ----------------------------GTAGVYPTFNPAMISTLVNSSTPCRQILPMYNTDISS 1070

  Fly   596 --MPTAPQQQQQQQQQQQQLLNGRPSPTASGSSGGRSSAHSSGHTAAHSPALAAAYQLTPSAATS 658
              :|||         ...::||    ||.|...||.|||                         .
 Worm  1071 FFLPTA---------SAFRVLN----PTISSIIGGFSSA-------------------------D 1097

  Fly   659 SATSAAAAAATAAAVAAAAAAGSSFAASASMLDMQQQHLE 698
            :.|:...|.||     ..||...||..:||||...|:.||
 Worm  1098 TVTTPLGAPAT-----TMAAMKMSFPETASMLPQLQEKLE 1132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 26/74 (35%)
gei-3NP_001076772.1 DUF4819 194..275 CDD:465014
HMG-box_CIC-like 842..918 CDD:438806 31/112 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.