Sequence 1: | NP_001260269.1 | Gene: | SoxN / 44275 | FlyBaseID: | FBgn0029123 | Length: | 761 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_498633.1 | Gene: | hmg-4 / 176052 | WormBaseID: | WBGene00001974 | Length: | 697 | Species: | Caenorhabditis elegans |
Alignment Length: | 228 | Identity: | 40/228 - (17%) |
---|---|---|---|
Similarity: | 90/228 - (39%) | Gaps: | 39/228 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 89 GSQVGQQQQQQQQQQSSPLHSSSELSP-TQSSIGSHHMTSPVSHQQHTQQQQHGQQQHLGAGSAL 152
Fly 153 SSLTGGSSNNNNNSATANKNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQW 217
Fly 218 KDLSESEKRPFIDEAKRLRAVHMKEHPDYKYR--PRRKTK---TLTKTKEKYPMGG-LMPGQTVG 276
Fly 277 GGAPGEPVTPTRVQGQPG----QNQSLNGSGGS 305 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SoxN | NP_001260269.1 | SOX-TCF_HMG-box | 178..249 | CDD:238684 | 18/70 (26%) |
hmg-4 | NP_498633.1 | SSrecog | 75..285 | CDD:281523 | |
PH2_SSRP1-like | 332..429 | CDD:270051 | |||
HMGB-UBF_HMG-box | 556..619 | CDD:238686 | 17/64 (27%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |