DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and hmg-1.1

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001370073.1 Gene:hmg-1.1 / 175081 WormBaseID:WBGene00001971 Length:95 Species:Caenorhabditis elegans


Alignment Length:82 Identity:21/82 - (25%)
Similarity:35/82 - (42%) Gaps:16/82 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 ATANKNQQHADRV------------KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKD 219
            |.|.|......||            ||.|:||..|.:..|.::  ..|.|..::::|..|.:|..
 Worm     4 AAAGKKASPVKRVKKGGKAKDPNAPKRAMSAFFFWMQENRERI--KKPGMGVADVAKAAGVEWGK 66

  Fly   220 LSESEK--RPFIDEAKR 234
            |::..:  :...|:.||
 Worm    67 LTDKSRWEKKAADDKKR 83

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 18/71 (25%)
hmg-1.1NP_001370073.1 HMGB-UBF_HMG-box 28..89 CDD:238686 16/58 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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