Protein Alignment SoxN and sem-2

DIOPT Version :9

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: NP_740846.1
• Gene: sem-2 / 172162
• WormBaseID: WBGene00004771
• Length: 404
• Species: Caenorhabditis elegans
• Alignment Length: 383
• Identity: 105/383 - (27%)
• Similarity: 153/383 - (39%)
• Gaps: 103/383 - (26%)

  Fly   124 HMTSPVSHQQHTQQQQHGQQQHLGAGSALSSLTGGSSN--NNNNSATANKNQQH----------- 175
            ||..|::              ...|..|::|.|.|::|  ::|:.||:.:.|.|
 Worm    18 HMMPPIN--------------WAAAAIAVASSTSGATNATSSNSVATSQQLQHHPYGTAAGGYKH 68

  Fly   176 ---------------------ADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKD 219
                                 ::.:|||||||||||:.:|||:....|.|||:||||:||::|:.
 Worm    69 AQQAIPKSVTPYSDATNCKKSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRS 133

  Fly   220 LSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPV 284
            |::.||.||:.||:|||..||:|:|||||:||:|.|       |.|.|.|.        .|.:|.
 Worm   134 LTDEEKAPFVAEAERLRVCHMQEYPDYKYKPRKKPK-------KNPDGTLQ--------QPAQPQ 183

  Fly   285 TPTRVQGQPGQNQSLNGSGGSAAAAAAAAAAAAQQARQDMYQ----MNAPNGYMPNGYMMHAD-- 343
            .|.:.|..|        .|.|..|.........||:....:|    :.....:|.|.:|.||.
 Worm   184 APQQQQAPP--------RGASPQARQRKRPNTDQQSETQQFQNFKSVKVEQDWMGNAHMSHAQKM 240

  Fly   344 ------PAGA----------AAYQTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSL 392
                  |:.:          :.:...|..|.:..|.:...|..:.|..:..|..|   ...|...
 Worm   241 PFHPSYPSPSEFGHAPLTPESGFYDDYFTQQHHQQHFASQHHNSAGSPLRMTNLG---MDMGMPP 302

  Fly   393 QQPGSPSPYGGSS----LQQQPGS---PTPYGGGGGGGGQVSCQSHSPSDSSIKSEPV 443
            |..|..|.:|..:    |...|.|   ........|..|...|.:...|.||..|..|
 Worm   303 QMMGHNSGFGAGNHPFYLHTSPPSVDQDDMRSLSSGSSGYADCSASEQSTSSPNSAGV 360

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	SOX-TCF_HMG-box	178..249	CDD:238684	42/70 (60%)
sem-2	NP_740846.1	SOX-TCF_HMG-box	92..159	CDD:238684	38/66 (58%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0527
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	136	1.000	Inparanoid score	I3128
Isobase	1	0.950	-	0	Normalized mean entropy	S1275
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000028
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR10270
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.910