DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and sox8a

DIOPT Version :10

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001271361.1 Gene:sox8a / 102216265 ZFINID:ZDB-GENE-130530-719 Length:401 Species:Danio rerio


Alignment Length:280 Identity:96/280 - (34%)
Similarity:133/280 - (47%) Gaps:64/280 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 KNQQHADRVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRL 235
            |::.|   |||||||||||::..|||:|...|.:||:|:||.||..|:.|||||||||::||:||
Zfish    81 KDKPH---VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERL 142

  Fly   236 RAVHMKEHPDYKYRPRRK--------------TKTLTKTKEKYPM-GGL--MPGQTVGG----GA 279
            |..|.|::|||||:|||:              .|.|..|...|.. .|:  |..||:.|    |.
Zfish   143 RLQHKKDYPDYKYQPRRRKSLKPGQNEAEAGAEKNLHHTDPIYKTEAGMRAMHHQTIHGVQPHGP 207

  Fly   280 PGEPVTPTRVQGQ------PGQNQSLNGSGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMP-NG 337
            |..|.||...|.|      ....|:::.|....:..::....:..|     :.:...:.|:| ||
Zfish   208 PTPPTTPKSDQHQSMKRLSENARQNIDFSNVDISELSSDVIGSISQ-----FDVREFDQYLPLNG 267

  Fly   338 YMMHADPAGAAAYQTSYMGQHYAAQRYDMGHMYNNGYAMYQTVSGGQTSPYGSSLQQPG------ 396
               |.:..|         |||.:...:.....:::|.:.:...||   ||..||..|..      
Zfish   268 ---HTESGG---------GQHSSPGCFSTSFHHHSGASAWNKPSG---SPSTSSANQQRPLIKTE 317

  Fly   397 --SPSPYGGSSLQQQPGSPT 414
              |||.||     |..||||
Zfish   318 QLSPSHYG-----QSHGSPT 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 HMG-box_SoxB 177..252 CDD:438790 46/74 (62%)
sox8aNP_001271361.1 Sox_N <47..73 CDD:463586
HMG-box_SoxE 85..159 CDD:438840 47/76 (62%)
Blue background indicates that the domain is not in the aligned region.

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