DRSC/TRiP Functional Genomics Resources

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Protein Alignment SoxN and sox15

DIOPT Version :9

Sequence 1:NP_001260269.1 Gene:SoxN / 44275 FlyBaseID:FBgn0029123 Length:761 Species:Drosophila melanogaster
Sequence 2:NP_001120046.1 Gene:sox15 / 100145022 XenbaseID:XB-GENE-6455809 Length:199 Species:Xenopus tropicalis


Alignment Length:216 Identity:77/216 - (35%)
Similarity:99/216 - (45%) Gaps:50/216 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEH 243
            ||||||||||||.|:|::|::.:|||||||||:|||..|:.|.|.|:|||.:|||||||.|..::
 Frog    22 VKRPMNAFMVWSSGERKRMSARHPKMHNSEISRRLGEIWRGLGEDERRPFREEAKRLRAQHAIDY 86

  Fly   244 PDYKYRPRRKTKTLTKTKEKYPMGGL--MPGQTVGGGAPGE-----PVTPTRVQGQPGQNQSLNG 301
            |.|||.||:|.|...:..:..|...|  .||.:    .|.:     |..||...|          
 Frog    87 PGYKYAPRKKRKERGEPPKVAPQAPLPCPPGSS----PPRDPQLHPPPPPTHYNG---------- 137

  Fly   302 SGGSAAAAAAAAAAAAQQARQDMYQMNAPNGYMPNGYMMHADPAGAAAYQTSYMGQHYAAQRYDM 366
                               .||.|      ||:|.......:|...:....|.:   |....||.
 Frog   138 -------------------FQDGY------GYLPYPCPPRPEPFLPSVSDVSAL---YGFGLYDY 174

  Fly   367 G-HMYNNGYAMYQTVSGGQTS 386
            | |........|||:....||
 Frog   175 GEHRGAPQQVQYQTLEVDGTS 195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SoxNNP_001260269.1 SOX-TCF_HMG-box 178..249 CDD:238684 45/69 (65%)
sox15NP_001120046.1 SOX-TCF_HMG-box 22..91 CDD:238684 44/68 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000028
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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