DRSC/TRiP Functional Genomics Resources

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Protein Alignment disp and Ptchd4

DIOPT Version :9

Sequence 1:NP_524734.2 Gene:disp / 44274 FlyBaseID:FBgn0029088 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_001342199.1 Gene:Ptchd4 / 627626 MGIID:1920485 Length:904 Species:Mus musculus


Alignment Length:665 Identity:122/665 - (18%)
Similarity:225/665 - (33%) Gaps:201/665 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   576 VTSLTTAGAFY---ASYSSSITAIKCFGIFAGTVVVTNYLLMITW------LPASVSIMERLFAT 631
            ::..|.||.|:   ..|:|::..|..|.:..||..|  :.|:..|      ||....:.:.....
Mouse   332 ISIATAAGIFFITDGKYNSTLLGIPFFAMGHGTKGV--FELLSGWRRTKENLPFKDRVADAYSDV 394

  Fly   632 RMSCHHPMSIKLI--------HACKKSINRFCQMFEECITKSIMNYAYLWLLIFGALGASSAVIV 688
            .::.....|:..|        ....:::..|||  ..|:: .::||.|    ||...|   :.:|
Mouse   395 MVTYTMTSSLYFITFGMGASPFTNIEAVKIFCQ--NMCVS-ILLNYFY----IFSFFG---SCLV 449

  Fly   689 FWYPGLQLPEKSHFQLFVSKHPFEVYSSLKQQFWFEKPLQAYENFKMHMHFVWGVQAVDDGDY-- 751
            |   ..||.:..:..:|..|.|...|..       .||             ||....:.||..  
Mouse   450 F---AGQLEQNRYHSIFCCKIPSAEYLD-------RKP-------------VWFQTVMSDGHQQT 491

  Fly   752 ----TNPNSYGHLHYDNNF----------NVSSRP---------------AQLWILDFCQ----- 782
                |||  |.| |:..:|          |:..:|               ..|.|.|...     
Mouse   492 SHHETNP--YQH-HFIQHFLREHYNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGASIINLL 553

  Fly   783 ----------SVRQQPF--YKETLGMLLPNCFIENLIDYMKRRCIDDMDSTRKDRSPCCD--AQF 833
                      .|:|:.|  |...:|.     ::...::|..       .|.::|....|.  ...
Mouse   554 ASDSPSVSYAMVQQKYFSNYSPVIGF-----YVYEPLEYWN-------SSVQEDLQRLCSGFTAV 606

  Fly   834 PFEPHIFEYCLPQSISNMYDTTFFRPGVAGPKFAEAPRLE--TEDYLGMSGNESAEYSTNGSFTP 896
            .:....:::....:||....|.|.  .|....|.:.|..:  ..|.:         :|..|.   
Mouse   607 SWVEQYYQFLKTSNISANNKTDFI--SVLQSSFLKKPEFQHFRNDII---------FSRAGD--- 657

  Fly   897 LLVKALVIEFESNVAYSTIYANIRQFYESVEHWFQMQLKTAPPELQGGWFTSDLKF------YNV 955
                      |:|:..|.:|...|...:..:...::..|..|..|     :..::|      :..
Mouse   658 ----------ENNIIASRLYLVARTSRDKQKEVIEVLDKLRPLSL-----SKSIRFIVFNPSFVF 707

  Fly   956 QDTLSHDTFVAICLAMAASLAVLLC---FTVNILISIYAVLTVSLSIFNTVAVLILLGWQLNILE 1017
            .|..|....|.:.:|....|.||:.   ..::.|.:.:.:|:|:......:.::.|  |.:: ::
Mouse   708 TDHYSLSVTVPVLIAGFGVLLVLILTFFLVIHPLGNFWLILSVTSIELGVLGLMTL--WNVD-MD 769

  Fly  1018 SIAVSTAIGLAVDFSLHYGIHYRMSPVKERLAATQFVLSRII-------GPTVMAATTTGLAGGI 1075
            .|::     |.:.::|::.|.:....:...:.||:...::.|       |..::...|:.|.|  
Mouse   770 CISI-----LCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKSSLQEHGTAILQNITSFLIG-- 827

  Fly  1076 MMASNILPYIQIGVFLVVVMIVSWFYATFFLMSLLRVAGP---QHGFLELKWPLW------SKRS 1131
                 :||.:.:...|           ||.|...|.:.|.   .|.|:.|  |::      ||:.
Mouse   828 -----LLPLLFVPSNL-----------TFTLFKCLLLTGGCTLLHCFVIL--PVFLTFFPPSKKH 874

  Fly  1132 SGSSKFYERKPSQVI 1146
            ....|..:||..:.|
Mouse   875 HKKKKRAKRKEREEI 889

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dispNP_524734.2 Patched <444..1111 CDD:280598 110/619 (18%)
MMPL 457..627 CDD:304422 15/59 (25%)
TM_PBP1_branched-chain-AA_like 964..>1109 CDD:294309 27/154 (18%)
Ptchd4NP_001342199.1 Patched 84..870 CDD:355433 116/644 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845392
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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