DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment disp and Ptch2

DIOPT Version :9

Sequence 1:NP_524734.2 Gene:disp / 44274 FlyBaseID:FBgn0029088 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_001102445.2 Gene:Ptch2 / 366452 RGDID:1309039 Length:1182 Species:Rattus norvegicus


Alignment Length:902 Identity:177/902 - (19%)
Similarity:294/902 - (32%) Gaps:292/902 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   381 DFSFIKSNDSNVYLKYAMIFIPVAQSNRLLPL-----FHEWEDVELINELVEVVAMDLGLENELF 440
            |..:.:...|.|...:...|:.:||  ..||.     .|.:....|.:.|            :.|
  Rat   340 DIGWSEEQASMVLQAWQRRFVQLAQ--EALPANASQQIHAFSSTTLDDIL------------QAF 390

  Fly   441 NELLLTDVWLVSLGGTFVMASVWLYT-------------GSAFITLMSCVAICFSLGLAYFFYAI 492
            :|:..|.|    :||..:|.:....|             |.|.:.|:: :|:...|||     ..
  Rat   391 SEVSATRV----VGGYLLMLAYACITMLRWDCAQSQGAVGLAGVLLVA-LAVASGLGL-----CA 445

  Fly   493 VLEFEFFPYMNLLAVVVIIGIGADDVFLFLKIWHCVLTERFSNRCTLTTQSQSALPTLENSDHTE 557
            :|...|......:...:.:|||.||:||        |...|       |::....|..|.     
  Rat   446 LLGITFNAATTQVLPFLALGIGVDDIFL--------LAHAF-------TKAPPNTPLPER----- 490

  Fly   558 SLENIMALTMRHAAASMFVTSLTTAGAFYASYSSSITAIKCFGIFAGTVVVTNYLLMITWLPASV 622
                 |...:|....|:.:||:....||:.:....|.|::.|.:.|..||..|:..::...||.:
  Rat   491 -----MGECLRRTGTSVALTSINNMVAFFMAVLVPIPALRAFSLQAAIVVGCNFAAVMLVFPAVL 550

  Fly   623 SI-MERLFATRMS---C-HHPMSIKLIHACKKS------------INRFCQMFEECITKS----- 665
            |: :.|....|:.   | ..|.|.::|....:.            :....|.|..|...|     
  Rat   551 SLDLRRRHRQRLDVLCCFSSPCSAQVIQMLPQELGDRAVPVGIAHLTATVQAFTHCEASSQHVVT 615

  Fly   666 -------------------------------------------------------IMNYAY---- 671
                                                                   ...|.:    
  Rat   616 ILPPQAHLLSPTSDPLGSELYSPGGSTRDLLGQEEGTRPKASCRSLLCAHWTLAHFARYQFAPLL 680

  Fly   672 -------LWLLIFGA-LGASSAVIVFWYPGLQLPE------KSHFQLFVSKHPFEVYS-SLKQQF 721
                   |.||.||| ||.|.........||.|.:      |.|..|......|.:|. :|..|.
  Rat   681 LQTQAKALVLLFFGALLGLSLYGATLVQDGLALTDVVPRGTKEHAFLSAQLRYFSLYEVALVTQG 745

  Fly   722 WFEKPLQAYENFKMHMHF----------------VW---------GVQAVDDGDYTN----PNSY 757
            .|:........|.:|..|                .|         |:|...|.|:.:    .|||
  Rat   746 GFDYAHSQRALFDLHQRFSSLKAVLPPPAAQAPRTWLHYYRSWLQGIQTAFDQDWASGRITRNSY 810

  Fly   758 ------GHLHYDNNFNVSSRPAQLWILDFCQSVRQQPFYKETLGMLLPNCFIENLIDYMKRRCID 816
                  |.|.|  ...:.:..|| ..|||.|...::...||  |::.|..|...|..::.     
  Rat   811 RNGSEDGALAY--KLLIQTGNAQ-EPLDFNQLTTRKLVDKE--GLIPPELFYMGLTVWVS----- 865

  Fly   817 DMDSTRKDRSPCCDAQFPFEPHIFEYCLPQSISNMYDTT--FFRPGVAGP-KFAEAPRL-----E 873
                  .|......:|..|.|.     .|:.:.:.||||  ..|...|.| :||:.|.|     :
  Rat   866 ------SDPLGLAASQANFYPP-----PPEWLHDKYDTTGENLRIPAAQPLEFAQFPFLLHGLQK 919

  Fly   874 TEDYL-GMSGNESA--EYSTNG-----SFTPLLVKALVIEFESNVAYSTIYANIRQFYESVEHWF 930
            |.|:: .:.|..:|  |....|     |.:|.|             :...|..:|:.:       
  Rat   920 TADFVEAIEGARAACTEAGQAGVHAYPSGSPFL-------------FWEQYLGLRRCF------- 964

  Fly   931 QMQLKTAPPELQGGWFTSDLKFYNVQDTLSHDTFVAICLAMAASLAVLLCFTVNILISIYAVLTV 995
                                        |.....:.:|..:..:|.:|..:|..:::.:.|::||
  Rat   965 ----------------------------LLAVCILLLCTFLVCALLLLNPWTAGLIVLVLAMMTV 1001

  Fly   996 SLSIFNTVAVLILLGWQLNILESIAVSTAIGLAVDFSLHYGIHYRMSPVKERLAATQFVLSRIIG 1060
            .|     ..::..||.:|:.:..:.:..::|:.|:|::|..:.:..|.....|.|.: .|.:...
  Rat  1002 EL-----FGIMGFLGIKLSAIPVVILVASVGIGVEFTVHVALGFLTSHGSRNLRAAR-ALEQTFA 1060

  Fly  1061 PTVMAATTTGLAGGIMMASNILPYI--QIGVFLVVVMIVSWFYATFFLMSLLRVAGP 1115
            |....|.:| |.|.:|:|.:...:|  ...|.|.|:.::...:....|..||.:.||
  Rat  1061 PVTDGAVST-LLGLLMLAGSNFDFIIRYFFVVLTVLTLLGLLHGLLLLPVLLSILGP 1116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dispNP_524734.2 Patched <444..1111 CDD:280598 161/828 (19%)
MMPL 457..627 CDD:304422 40/183 (22%)
TM_PBP1_branched-chain-AA_like 964..>1109 CDD:294309 31/146 (21%)
Ptch2NP_001102445.2 Patched 12..1142 CDD:355433 177/902 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348799
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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