DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment disp and Ptch2

DIOPT Version :9

Sequence 1:NP_524734.2 Gene:disp / 44274 FlyBaseID:FBgn0029088 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_032984.1 Gene:Ptch2 / 19207 MGIID:1095405 Length:1182 Species:Mus musculus


Alignment Length:883 Identity:172/883 - (19%)
Similarity:283/883 - (32%) Gaps:294/883 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   451 VSLGGTFVMASVWLYTGSAFITLMSCVAICFSLGLAYFFYAIVLEFEFFPYMNLLAVVVIIGIGA 515
            |.|.|..::|          :.:.|.:.:|..||:.  |.|...  :..|::.|       |||.
Mouse   425 VGLAGVLLVA----------LAVASGLGLCALLGIT--FNAATT--QVLPFLAL-------GIGV 468

  Fly   516 DDVFLFLKIWHCVLTERFSNRCTLTTQSQSALPTLENSDHTESLENIMALTMRHAAASMFVTSLT 580
            ||:||        |...|       |::....|..|.          |...:|....|:.:||:.
Mouse   469 DDIFL--------LAHAF-------TKAPPDTPLPER----------MGECLRSTGTSVALTSVN 508

  Fly   581 TAGAFYASYSSSITAIKCFGIFAGTVVVTNYLLMITWLPASVSI-MERLFATRMS---C-HHPMS 640
            ...||:.:....|.|::.|.:.|..||..|:..::...||.:|: :.|....|:.   | ..|.|
Mouse   509 NMVAFFMAALVPIPALRAFSLQAAIVVGCNFAAVMLVFPAILSLDLRRRHRQRLDVLCCFSSPCS 573

  Fly   641 IKLIHACKKS------------INRFCQMFEEC-------------------------------- 661
            .::|....:.            :....|.|..|                                
Mouse   574 AQVIQMLPQELGDRAVPVGIAHLTATVQAFTHCEASSQHVVTILPPQAHLLSPASDPLGSELYSP 638

  Fly   662 --ITKSIMN--------------------------YAY-----------LWLLIFGA-LGASSAV 686
              .|:.:::                          |.:           |.||.||| ||.|...
Mouse   639 GGSTRDLLSQEEGTGPQAACRPLLCAHWTLAHFARYQFAPLLLQTRAKALVLLFFGALLGLSLYG 703

  Fly   687 IVFWYPGLQLPE------KSHFQLFVSKHPFEVYS-SLKQQFWFEKPLQAYENFKMHMHF----- 739
            ......||.|.:      |.|..|......|.:|. :|..|..|:........|.:|..|     
Mouse   704 ATLVQDGLALTDVVPRGTKEHAFLSAQLRYFSLYEVALVTQGGFDYAHSQRALFDLHQRFSSLKA 768

  Fly   740 -----------VW---------GVQAVDDGDYTNPNSYGHLHYDNNFNVSSRPAQLWI------- 777
                       .|         |:||..|.|:.:.....| .|.|.....:...:|.|       
Mouse   769 VLPPPATQAPRTWLHYYRSWLQGIQAAFDQDWASGRITCH-SYRNGSEDGALAYKLLIQTGNAQE 832

  Fly   778 -LDFCQSVRQQPFYKETLGMLLPNCFIENLIDYMKRRCIDDMDSTRKDRSPCCDAQFPFEPHIFE 841
             |||.|...::...||  |::.|..|...|..::.           .|......:|..|.|.   
Mouse   833 PLDFSQLTTRKLVDKE--GLIPPELFYMGLTVWVS-----------SDPLGLAASQANFYPP--- 881

  Fly   842 YCLPQSISNMYDTT--FFRPGVAGP-KFAEAPRL-----ETEDYL-GMSGNESA--EYSTNG--- 892
              .|:.:.:.||||  ..|...|.| :||:.|.|     :|.|:: .:.|..:|  |....|   
Mouse   882 --PPEWLHDKYDTTGENLRIPAAQPLEFAQFPFLLHGLQKTADFVEAIEGARAACTEAGQAGVHA 944

  Fly   893 --SFTPLLVKALVIEFESNVAYSTIYANIRQFYESVEHWFQMQLKTAPPELQGGWFTSDLKFYNV 955
              |.:|.|             :...|..:|:.:                                
Mouse   945 YPSGSPFL-------------FWEQYLGLRRCF-------------------------------- 964

  Fly   956 QDTLSHDTFVAICLAMAASLAVLLCFTVNILISIYAVLTVSLSIFNTVAVLILLGWQLNILESIA 1020
               |.....:.:|..:..:|.:|..:|..:::.:.|::||.|     ..::..||.:|:.:..:.
Mouse   965 ---LLAVCILLVCTFLVCALLLLSPWTAGLIVLVLAMMTVEL-----FGIMGFLGIKLSAIPVVI 1021

  Fly  1021 VSTAIGLAVDFSLHYGIHYRMSPVKERLAATQFVLSRIIGPTVMAATTTGLAGGIMMASNILPYI 1085
            :..:||:.|:|::|..:.:..|.....|.|.. .|.:...|....|.:| |.|.:|:|.:...:|
Mouse  1022 LVASIGIGVEFTVHVALGFLTSHGSRNLRAAS-ALEQTFAPVTDGAVST-LLGLLMLAGSNFDFI 1084

  Fly  1086 --QIGVFLVVVMIVSWFYATFFLMSLLRVAG--------------------PQHGFLELKWPLWS 1128
              ...|.|.|:.::...:....|..||.:.|                    ||.|.|.     |.
Mouse  1085 IRYFFVVLTVLTLLGLLHGLLLLPVLLSILGPPPQVVQVYKESPQTLNSAAPQRGGLR-----WD 1144

  Fly  1129 KRSSGSSKFYERKPSQVIASEQLLTPTSSAIVELANSE 1166
            :..:....|.....|..:|...  .|...|.|..|:.|
Mouse  1145 RPPTLPQSFARVTTSMTVALHP--PPLPGAYVHPASEE 1180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dispNP_524734.2 Patched <444..1111 CDD:280598 157/806 (19%)
MMPL 457..627 CDD:304422 38/170 (22%)
TM_PBP1_branched-chain-AA_like 964..>1109 CDD:294309 32/146 (22%)
Ptch2NP_032984.1 2A060602 12..1142 CDD:273338 162/836 (19%)
Sterol-sensing 418..570 CDD:289145 44/190 (23%)
7TM-7TMR_HD 961..1085 CDD:285000 29/165 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845389
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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