DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment disp and ptchd3

DIOPT Version :9

Sequence 1:NP_524734.2 Gene:disp / 44274 FlyBaseID:FBgn0029088 Length:1218 Species:Drosophila melanogaster
Sequence 2:XP_031759849.1 Gene:ptchd3 / 100494800 XenbaseID:XB-GENE-950407 Length:982 Species:Xenopus tropicalis


Alignment Length:936 Identity:186/936 - (19%)
Similarity:335/936 - (35%) Gaps:290/936 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 SLPNYAAMLANKS-----SCFDLTTEDVTSLHTLLLGCYEYFHDLKMDNHCNEIPHCRAPEECKR 368
            |.|.:..||..||     |||.|.......|..:.....|:|....:..|.:..        ||:
 Frog   229 SFPQHLQMLQLKSVQVKKSCFFLVQFPPQCLSPVSPALIEHFLQKLVGPHADIF--------CKK 285

  Fly   369 LNI-------------VFNVLNFLTDFSFIKSNDSNVYLKYAMIFIPVAQSNRLLPLFHEWEDVE 420
            ..:             :|..:.:.|..|..|..:.:              :.|.:|.|.....|.
 Frog   286 FFVFFLRWAGLQEQYYLFIFVYYYTSVSLQKQLEED--------------AKRAMPFFSVTFIVT 336

  Fly   421 LINELVEVVAMDLGLENELFNELLLTDVWLVSLGGTFVMASVWLYTGSAFITLMSCVAICFSLGL 485
            ::..::..|... .:.|:         :| |:|.|.       :..|.|.:|....:.:|   |.
 Frog   337 ILFSVLSCVRCH-NVRNK---------IW-VALFGV-------ISPGLAILTSFGLLLMC---GA 380

  Fly   486 AYFFYAIVLEFEFFPYMNLLAVVVIIGIGADDVFLFLKIWHCVLTERFSNRCTLTTQSQSALPTL 550
            .:...|:...|            :|:|.|.|::|:.:..|     ::...|.|            
 Frog   381 PFAITAVNAPF------------LILGAGVDNMFIIISCW-----QQTKMRAT------------ 416

  Fly   551 ENSDHTESLENIMALTMRHAAASMFVTSLTTAGAFYASYSSSITAIKCFGIFAGTVVVTNYLLMI 615
                    ||..||.|.:.||.|:.:|:||...|||....:...:::.|.|:|||.:|..|:..|
 Frog   417 --------LEERMAETYQEAAVSITITTLTDVLAFYIGIMTHFPSVQSFCIYAGTALVFCYVYCI 473

  Fly   616 TWLPASVSIMERLFATRMSCHHPMSIKLIHACKKSINR---FCQMFEECITKSIMNYAYLWLLIF 677
            |:..|.:::..:|                    ::.||   .|....: ..:|..|..|....:.
 Frog   474 TFFGAVLALNGKL--------------------ENDNRHWFICVKVND-TEESGQNTMYQMCCLG 517

  Fly   678 GALGASSAVIVFWYPGLQLPEKSHFQLFVSKHPFEV-----YSSLKQQFWFE----------KPL 727
            |:...|..:.:                   :||..|     |.......|.:          ..:
 Frog   518 GSFETSEGIEI-------------------EHPVTVFFHKYYGVFLTNQWTKLLTVVVYLGYLAI 563

  Fly   728 QAYENFKMHMHFVWGVQAVDDGDYTNPNSYGHLHYDNNFNVSSRPAQLWILDFCQSVRQQPFYKE 792
            ..|..||:.       ..||...:.|.|||...:|.|.        .|:...:...|        
 Frog   564 SIYGCFKLQ-------GGVDIQKFPNDNSYLSQYYTNE--------ALYFAGYGPRV-------- 605

  Fly   793 TLGMLLPNCFIENLIDYMKRRCIDDMDSTRKDRSPCCDAQFPFEPHIFEYCLPQSISNMYDTTFF 857
               |::    :.:.|.|.:.:...:::|                      |:.:..:|.|     
 Frog   606 ---MVV----VTSEIAYWEPQTSKEIES----------------------CMQKLENNSY----- 636

  Fly   858 RPGVAGPKFAEAPRLETEDYLGMSGNESAEYSTNGSFTPL-LVKALVIEFESNV--AYSTIYANI 919
                ...||.|: .|.|.:::..:.|.|. .:.:|....| ::.|...||:.::  ..:.|.|: 
 Frog   637 ----VDKKFTES-WLRTYEHMSKALNVSI-ITKDGFMNNLDIIFAYFAEFKQDIDKEGNKIKAS- 694

  Fly   920 RQFYESVEHWFQMQLKTAPPELQGGWFTSDLKFYNVQDTLSHDTFVAICL---AMAASLAV---L 978
            |.|.:::.....:..:....:|:|...:.::..:     :.|..|  |||   |:....||   :
 Frog   695 RFFVQTINVVGAIDERNMATQLRGIAASCNIPLF-----VYHPIF--ICLDRYALIIQSAVQNMI 752

  Fly   979 LCFTVNILISIYAVLTVSLSIFNTVAVL-ILLG-------WQLNILESIAVST---AIGLAVDFS 1032
            :.|.|.:::|:..:.....|::.|.|:. |::|       |::| |:||::.|   .||.:||||
 Frog   753 VAFVVMLVVSLLFIPNPLCSLWVTFAIASIIVGVAGFMAFWRVN-LDSISLITLVICIGFSVDFS 816

  Fly  1033 LHYGIHYR-MSPVKERLAATQFVLSRIIG-PTVMAATTTGLAGGIMMASNILPYIQIGVFLVVVM 1095
            .|  |.|. .|..||:..........::| |.|..|.:|.|  |::..|               :
 Frog   817 SH--IAYACFSSKKEKTEERVIDALHVLGYPIVQGALSTIL--GVVALS---------------V 862

  Fly  1096 IVSWFYATFFLMSLLRVA-GPQHG------FLE-LKWPLWSKRSSGSSKFYERKPSQVIASEQLL 1152
            ..|:.:.|||.::.|.:| |..||      ||. :..|.||..|       :.||.::  |.|  
 Frog   863 AESYIFKTFFKLTCLVIAFGVLHGLVFIPVFLTIIACPRWSHVS-------KVKPLKI--SHQ-- 916

  Fly  1153 TPTSSAIVELANSETHELESLNSNSL 1178
              .::.:.||.....:.:.|:..::|
 Frog   917 --PANIMTELERQRENPIRSVQKDNL 940

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dispNP_524734.2 Patched <444..1111 CDD:280598 141/706 (20%)
MMPL 457..627 CDD:304422 39/169 (23%)
TM_PBP1_branched-chain-AA_like 964..>1109 CDD:294309 45/163 (28%)
ptchd3XP_031759849.1 Patched 95..898 CDD:355433 174/879 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.