DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tio and tshz3b

DIOPT Version :9

Sequence 1:NP_001260679.1 Gene:tio / 44272 FlyBaseID:FBgn0028979 Length:1024 Species:Drosophila melanogaster
Sequence 2:NP_001182336.1 Gene:tshz3b / 565811 ZFINID:ZDB-GENE-100319-2 Length:1147 Species:Danio rerio


Alignment Length:1121 Identity:214/1121 - (19%)
Similarity:356/1121 - (31%) Gaps:381/1121 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 AAYLAAAQQNHLLLTNPLAAAASLVQHATQQAVV-----------EGEVESPALDFSRKRPKSHG 157
            |||:....:...||...:....|.::.......|           .|..:||..|||.....|..
Zfish    13 AAYVPEELKEAALLDEDVEGEDSALEEEPAMKYVCQDKDLLLKDRPGFHDSPPADFSSHEMDSES 77

  Fly   158 DDDQEEDQEQD--------QEQEQEQEPDHDVQCDNGPLDLSVSTGKRQESVSPPARKIPRSISA 214
            ...:..|:..|        :|....:||...:...:..:..:.:|...:|: :|........:.|
Zfish    78 HLSESSDRMSDFESASVKNEEDSSAKEPLTSLSSTSSMMMTTTATPSSEEA-TPLGPDSLEQMKA 141

  Fly   215 DYKSPLPPGSW---------MPPINP----------YLAAVAAKTGGLGYSKLAPSEASKALEKM 260
            .|.|.|....|         .||..|          ..::.:..:||..:.:.|   .:|.|:.:
Zfish   142 IYTSFLTNSYWSSLNLNLSQQPPEKPPRSHSSSSSSSSSSSSCGSGGYDWHQTA---VAKTLQNV 203

  Fly   261 TE-MSRLETSPTAARSLGATSSVGAGVPAGASSNSGGRHSAWQSHWLNKGADTAKDVFKCVWCKQ 324
            :: .||| ..|.:..:|.:|..:..                 ||..|.....|....|:|..|..
Zfish   204 SQNQSRL-LHPASEPNLFSTVQLYR-----------------QSTKLYGSIFTGASKFRCKDCSA 250

  Fly   325 SFSTLANLTAHMKETQHCGVQIPSPLPTGGVGTPSAPPPTRLATSASNSACSSSSSSTSSSSNSS 389
            ::.||..||.||.||.|                                 ....:..|.|.....
Zfish   251 AYDTLVELTVHMNETGH---------------------------------YRDDNHETDSEGTKR 282

  Fly   390 KSELNMLIKETMPLPRKLVRGQDVWLGKGAEQTRQILKCMWCGQSFRSLAEMTSHMQETQHYTNI 454
            .|:         |..|.|:..:      |.|..:::||||:||.||.||.:::.||.:|:||..:
Zfish   283 WSK---------PRKRSLLEME------GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 332

  Fly   455 ISQE-------QIIS---WKSGDERERP----TNTGVPSTSTAAPSSPSCTAPS----------- 494
            ..:|       :|||   .::..|.|.|    :|.|.|..|.:.|:......|:           
Zfish   333 PLKEPVTPVAAKIISSARKRAPIELELPSSPDSNGGTPKPSLSDPNDLLQKTPNPYITPNNRYGH 397

  Fly   495 -------------VSAVLTCKVCDQAFGSLKELSTHMAQKSHY--------------KESPAPSA 532
                         .|.:|.|..|..:..:|:||:.||....|:              .||.:.:|
Zfish   398 QNGASYAWQFESRKSQILKCMECGSSHDTLQELTAHMMVTGHFIKVTNSAIKKGKPIMESMSTTA 462

  Fly   533 SPPAAGTGNPKRGRQNRNEKRKKSLPV-----------------------------RKLLELERS 568
            ..|..           .||.:.:|:|:                             .|.:|..|.
Zfish   463 PNPIL-----------TNEDKVQSVPLAATAFSPPPPAPPPPSISPAIMPMEIKKEEKEVECTRE 516

  Fly   569 GSNSSLDSALKPLRDFAAATKITCEKCGSKIETALFVEHIRKCLGESIPIPPRRSNAGVDRLPSP 633
            .:|:         :|..||...|.||.....:.....|.                    |...||
Zfish   517 TNNN---------KDKKAAESETDEKFEVSSKYPYLTEE--------------------DLEESP 552

  Fly   634 SLGLGAEKPPSVLNALEQLIEKSFESRTSRTMTHGGY-------------------SEAGTPL-- 677
            ..|.      .:|.:||..:..:.....:.|.:.|||                   |...:||  
Zfish   553 KGGF------DILKSLENTVTSAINKAQNGTPSWGGYPSIHAAYQLPNIMKLSLRNSGKSSPLKY 611

  Fly   678 ---GASILKRLGIEDSSDYTKPLM---DAQAMHLLRSSFASRDRSASE-SSSASRVESSYTPDRQ 735
               |..:|       |...::||:   ..|.....:::|.:.:....: :...::||........
Zfish   612 MFSGEELL-------SPTKSQPLISPPSCQTSPFPKNNFHAMEELVKKVTEKVAKVEEKMRDPGA 669

  Fly   736 QATPHKSPDTPAPPPPPPPTIKAEPLEAEPLVGCDREGCSPRQQIQVKKEFSMEACRESPRSVSK 800
            :::|.:. .||:|                         ||        .:....|..|||:....
Zfish   670 RSSPLRR-TTPSP-------------------------CS--------SDAGESARGESPKERRG 700

  Fly   801 SPAPQTERSPPDNGSLLALNSMFDQLSGVENSGNNNSGHCFNN--NNSCSSVS------AQKPKA 857
            :..|:|     :.|.:....|..|.|:  :.|..|.:.|....  :..|||.:      .::|..
Zfish   701 AKTPET-----NGGGITHKESNGDALT--KESLENGTDHVVKTPVSTLCSSTAIITDHPPEQPFV 758

  Fly   858 HPLAALQKLCE------------TTDPPSTGLRSASS-AGSSTASATLPS--ANGNDLV--AFSW 905
            :||:|||.:..            :.||.|...:.::| |..:..:|:.||  ...||.:  .|..
Zfish   759 NPLSALQSVMNVHLGKAAKPALPSLDPMSMLFKMSNSLAEKAAVAASTPSQTKKTNDHLDRYFYH 823

  Fly   906 ACNEAVLSASNG--------GSAGDSS---------------IIKCSYCDTPFASKGAYRHH-LS 946
            ..|:..:..:.|        |||..||               :.|.|.....|.|....|.: ||
Zfish   824 INNDQPIDLTKGKSDKSNSLGSAALSSSTSTPTSISPSSTITMAKASSAVASFMSNSPLRENALS 888

  Fly   947 KVHFVKDAGEDSPRLKSPAVQSPRSMPLASPRRSASRSPATGSQQPPPSPTISPYDE-------- 1003
            .:         |..|::  :....:...::|...:.||...|| .|..|..|||..:        
Zfish   889 DI---------SDMLRN--LTENHACKSSTPTSLSERSDIDGS-TPEESEEISPAQKRKGRQSNW 941

  Fly  1004 SPQSKFLKYTELAKQL 1019
            :||...:...:.|..|
Zfish   942 NPQHLLILQAQFASSL 957

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tioNP_001260679.1 zf-C2H2_2 <317..>344 CDD:289522 12/26 (46%)
C2H2 Zn finger 319..341 CDD:275371 10/21 (48%)
C2H2 Zn finger 428..450 CDD:275371 11/21 (52%)
zf-C2H2_4 927..949 CDD:290605 7/22 (32%)
tshz3bNP_001182336.1 C2H2 Zn finger 245..267 CDD:275371 10/21 (48%)
C2H2 Zn finger 306..328 CDD:275371 11/21 (52%)
homeodomain 935..1003 CDD:238039 4/23 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580303
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 101 1.000 Inparanoid score I4973
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6467
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12487
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.080

Return to query results.
Submit another query.