DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tio and tshz3a

DIOPT Version :9

Sequence 1:NP_001260679.1 Gene:tio / 44272 FlyBaseID:FBgn0028979 Length:1024 Species:Drosophila melanogaster
Sequence 2:XP_686844.3 Gene:tshz3a / 558522 ZFINID:ZDB-GENE-100322-1 Length:1021 Species:Danio rerio


Alignment Length:1003 Identity:208/1003 - (20%)
Similarity:354/1003 - (35%) Gaps:298/1003 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 AASLVQHATQQAVVEGEVESPALDFSRKRPKSHGDDDQEEDQE---QDQEQEQEQEPDHDVQCDN 185
            ||:......::.||:.|........:::.|:  |::|..||.:   .:|:....:...|||..::
Zfish    12 AAAYDSENGKETVVQTEGTESVCPVTKENPQ--GENDLGEDFKNPMDEQDCSASELSGHDVDSES 74

  Fly   186 -------GPLDLSVSTGKRQESVSPPARKIPRS----------ISADYKSPL--PPGSWMPPINP 231
                   ...|...:|.|.:|:.....:....:          :.|.|||.|  |..|::...:|
Zfish    75 HISESSEPTSDAESTTIKNEEATKDFIKDSSENSVCITDSLEQMKAIYKSFLNNPYWSFLSLNSP 139

  Fly   232 --YLAAVAAKTGGLGYSKLAP---------SEASKALEKMTEMSRLETSPTAARSL----GATSS 281
              |.....|.:.|...|..:|         |..:|.|:::::...:...|:...::    .:|..
Zfish   140 QSYADEQPASSSGSSSSNSSPGRTCYDWHQSAIAKTLQQVSQKPPIALEPSIFSTVQLYRQSTKL 204

  Fly   282 VGAGVPAGASSNSGGRHSAWQSHWLNKGADTAKDVFKCVWCKQSFSTLANLTAHMKETQHCGVQI 346
            .|: :..|||.                        |.|..|..::.||.:||.||.||.|     
Zfish   205 YGS-IFTGASK------------------------FHCKSCSAAYDTLLDLTVHMNETDH----- 239

  Fly   347 PSPLPTGGVGTPSAPPPTRLATSASNSACSSSSSSTSSSSNSSKSELNMLIKETMPLPRKLVRGQ 411
                                  ...::..|:|.|..|.|....:|.|.|                
Zfish   240 ----------------------YRDDNLESASKSGKSWSKPRKRSLLEM---------------- 266

  Fly   412 DVWLGKGAEQTRQILKCMWCGQSFRSLAEMTSHMQETQHYTNIISQE-------QIISWKSGDER 469
                 :|.|..:::|:||:||.||.||.:::.||.:|:||..:..:|       :::|    ..|
Zfish   267 -----EGKEDAQKVLRCMYCGHSFESLQDLSVHMIKTKHYQKVPLREPRTAIAAKVVS----SFR 322

  Fly   470 ER-PTNTGVPST--STAAPSSPS-----------------------CTAPSV---SAVLTCKVCD 505
            :| |....|..:  :|....||:                       .|:..|   |..|.|..|.
Zfish   323 KRVPVELDVAKSLHTTEQTRSPNEGHTRDILQMYSEQNIKDDLDQKTTSRGVHFKSQNLKCLECG 387

  Fly   506 QAFGSLKELSTHMAQKSHYKESPAPSASPPAAGTGNPKRGRQNRNEKR------KKSLPVRKLLE 564
            .:..||::||.||....|:.:  ...:......|.:||    :::||.      ...|...::||
Zfish   388 ISHDSLQQLSAHMMLTGHFLK--VTQSLQKTDKTPHPK----SKSEKSLSETTCSSPLAATRILE 446

  Fly   565 LERSGSNSSLDSALKPLRDFAAAT-KITCEKCGSKIETALFVEHIRKCLGESIPIPPRRSNAGVD 628
               |.|.||:.:.     |....| :||.:|.....|:| .|..:|:.||.|         |..|
Zfish   447 ---SSSYSSIATG-----DHKNKTQEITSQKSSESKESA-NVNDVRQKLGPS---------AKTD 493

  Fly   629 RLPSPSLGLGAEKPPSVLNALEQLIEKSFESRTSRTMTHGGYSEAGTPLGASILKRLGIEDSSDY 693
            .|....|....:....:|.:||..:..:.........:.|||..    :.|:...|       ::
Zfish   494 YLTEDDLKESPKMDFDILKSLENTVTSAINKAQKGAPSWGGYQS----IHAAYQLR-------NH 547

  Fly   694 TKPLMDAQAMHLLRSSFASRDRSASESSSASRVESSYTPDRQQATPHKSPDTPAPPPPPPPTIKA 758
            .||     |:|  ...:.|   |..:|||:..|:|.   |:....|   |.|  .|.....|::.
Zfish   548 LKP-----ALH--NPGYIS---SLKQSSSSQEVQSL---DKSNLIP---PST--QPSSSSTTVQV 594

  Fly   759 EPLE------AEPLVGCDR-------EGCSPRQQIQVKKEFSMEACRESPRSVSKSPAPQTERSP 810
            ..::      .|.....||       :| ||..|:...|..|:         :.|||:|::    
Zfish   595 SEVDELEMNVTEKDAEVDRKLKDLNGQG-SPHPQLLNLKGKSL---------MLKSPSPES---- 645

  Fly   811 PDNGSLLALNSMFDQLSGVENSGNNNSGHCFNNN--NSCSSVSAQ----KPKAHPLAALQKLCE- 868
                ::.:::.:.:..:..:.:..:.......:|  :..|.:|||    :|...||:|||.:.. 
Zfish   646 ----TVTSMSKITEGKTEEKETRKHKQDPTSTSNLYDDSSLLSAQPEPKQPSVSPLSALQSVMNL 706

  Fly   869 -----------TTDPPSTGLRSASSAGSSTASATLPSANGNDLVAFSWACNEA------------ 910
                       ..||.|..||.::|.....|.|. ||.:...|......|:|.            
Zfish   707 HLGKAAKPVRPVQDPMSMLLRMSNSMAERAALAG-PSGHSTKLSQLHSNCHEICRDQPIDLSKGK 770

  Fly   911 ----VLSASNGGSAGDSSIIKCSYCD-------TPFASKGAYRHHLSKVH--FVKDAGEDSPRLK 962
                :.:||..|.|..|||...|..:       ||          :|.:|  .:.|..:....|.
Zfish   771 NEQYLTTASVPGKALSSSISGASVSESNSPKIFTP----------VSPLHENALSDISDMLRNLS 825

  Fly   963 SPAVQSPRSMPLASPRRSASRSPATGSQ 990
            ...|..|.:: |..|.:|......|..:
Zfish   826 DSRVSKPPTL-LCRPEQSEIEGSRTSEE 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tioNP_001260679.1 zf-C2H2_2 <317..>344 CDD:289522 12/26 (46%)
C2H2 Zn finger 319..341 CDD:275371 10/21 (48%)
C2H2 Zn finger 428..450 CDD:275371 11/21 (52%)
zf-C2H2_4 927..949 CDD:290605 4/28 (14%)
tshz3aXP_686844.3 C2H2 Zn finger 217..239 CDD:275371 10/21 (48%)
C2H2 Zn finger 278..300 CDD:275371 11/21 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580304
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 101 1.000 Inparanoid score I4973
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D411087at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6467
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12487
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4785
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
77.120

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