DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tio and Tshz1

DIOPT Version :9

Sequence 1:NP_001260679.1 Gene:tio / 44272 FlyBaseID:FBgn0028979 Length:1024 Species:Drosophila melanogaster
Sequence 2:XP_038953268.1 Gene:Tshz1 / 307217 RGDID:1311684 Length:1083 Species:Rattus norvegicus


Alignment Length:1101 Identity:230/1101 - (20%)
Similarity:350/1101 - (31%) Gaps:396/1101 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 PLAAAASLVQHATQQAVVEGE-VESPALDFSRKRPKSHGDDDQEEDQEQDQEQEQEQEPDHDVQC 183
            |..:||.:.:...:.|.::.| ||...|..          |.||.:...::|.|.::...:    
  Rat     9 PRRSAAYVPEEELKAAEIDEEHVEDGGLSL----------DIQESEFVCNEETEIKEAQSY---- 59

  Fly   184 DNGPLDLSVSTGKRQESVSPPARKIPRSISADYKSPLPPGSWMPPINPYLAAVAAKTGGLGYSKL 248
            .|.|    |||...|:              |.|.||...||                     .:|
  Rat    60 QNSP----VSTATNQD--------------AGYGSPFSEGS---------------------DQL 85

  Fly   249 APSEASKALEKMTEMSRLETSPTAARSLGATSSVGAGVPAGASSNSGGRHSAWQSHWLNKGADTA 313
            |..::|.:.|:..|....::......||....:|.|.:.:         .|.|.|        .|
  Rat    86 AHFKSSTSREEKEEPQCPDSVSYPQDSLAQIKAVYANLFS---------ESCWSS--------LA 133

  Fly   314 KDVFKCVWCKQSFSTLANLTAHMKETQHCGVQIPSPLPTGGVGTPSAPPPTRLATSASNSA---- 374
            .|:      |:|.||.:|..|..||:                .||:..|||..|::|..:|    
  Rat   134 LDL------KKSSSTTSNNDASQKES----------------STPTPTPPTSTASTACTTATTAI 176

  Fly   375 --CSSSSSSTSSSSNSSKS-------ELNMLIKET-----MPLPR-----KLVRGQDVWLGK--- 417
              ||:|:|.:|::||:|.|       .|...:::|     :|.|.     :|.|..:...|.   
  Rat   177 TSCSTSTSHSSTTSNNSSSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVFT 241

  Fly   418 GAEQTRQILKCMWCGQSFRSLAEMTSHMQETQHYTNIISQEQIISWKSGDERERPTNTGVPSTST 482
            ||.:.|    |..|..::.:|.|:|.||.||.||.:             |.|::      .|..|
  Rat   242 GASKFR----CKDCSAAYDTLVELTVHMNETGHYRD-------------DNRDK------DSEKT 283

  Fly   483 AAPSSPSCTA-------PSVSAVLTCKVCDQAFGSLKELSTHMAQKSHYKESP------------ 528
            ...|.|...:       .....||.|..|..:|.||::||.||.:..||::.|            
  Rat   284 KRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLV 348

  Fly   529 -----------APSASPPAAG---------------TGNP------KRGRQN------RNEKRKK 555
                       |...||...|               |.||      :.|.||      :.|.||.
  Rat   349 PSTKKRALQDLASPCSPEPTGMATDVALSESAKDQKTANPYVTPNNRYGYQNGASYTWQFEARKA 413

  Fly   556 SLPVRKLLELERSGSNSSLDSALKPLRDFAAATKITCEKCGSKIETALFVEHIRKCLGESIPIPP 620
            .:    |..:|...|:.:|......:.......|:|..  .||....|.::.:.:...:|||:||
  Rat   414 QI----LKCMECGSSHDTLQQLTAHMMVTGHFLKVTTS--ASKKGKQLVLDPVVEEKIQSIPLPP 472

  Fly   621 ----RRSNAGVDRLPSPSLGLGA-------------EKPPSVLNALEQLIEKSFESRTSRTMTHG 668
                |...:.:.:.|....|..|             ||.|......|:.|::..|..|.:.....
  Rat   473 TTHTRLPASSIKKQPDSPAGSVASEEKKEPEKEKEKEKAPPTAGDTERKIKEETEDATEKFEPTA 537

  Fly   669 GY----------SEAGTPLGASILKRL-------------GIEDSSDY------------TKPLM 698
            .|          |..|   |..|||.|             |......|            .|||.
  Rat   538 LYQYLREEDLDDSPKG---GVDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLQ 599

  Fly   699 DAQAMHLLRSSFASRDRSASESSSASRVES--SYTPDRQQATPHKSPDTPAPPPPPPPTIKAEPL 761
            .|.....::.|:||..:|.|.:...:.:.|  |.||     .||||            .:.|...
  Rat   600 SAVQSVQIQPSYASSVKSLSSTEHNALLHSPGSLTP-----PPHKS------------NVSAMEE 647

  Fly   762 EAEPLVGCDREGCSPRQQIQVKKEFSMEACRESPRSVSK-------SPA-------PQTERS--- 809
            ..|.:.|          ::.||||       |.|....|       ||.       |::|.:   
  Rat   648 LVEKVTG----------KVSVKKE-------ERPTEKEKASPVKAISPVAKENKDLPKSEETGSK 695

  Fly   810 PPDNGSLLALNSMFDQLSGVENSGNNNSGHCFNN--------NNSCSSV------SAQKPKAHPL 860
            |...||        |..:|.....:....|..|.        .|.||::      |.:....:||
  Rat   696 PQKKGS--------DLETGKAKKESTVDAHTPNGTEPLKAKVTNGCSNLGIITDHSPEPSFINPL 752

  Fly   861 AALQKLCETTDPPSTGLRSASSAGSSTASATLPSANGNDLVAFSWACNEAVLSASNGGSAGDSSI 925
            :|||.:..|                .....:.|.:...|.:|..:..:.::|.            
  Rat   753 SALQSIMNT----------------HLGKVSKPVSPSLDPLAMLYKISNSMLD------------ 789

  Fly   926 IKCSYCDTPFASKGA-----YRHHLSKVHFVKDAGEDSPRLKSPAVQSP---------------- 969
             |..|..||.....|     |.:....:...|...:......:.||.||                
  Rat   790 -KPVYPTTPAKQADAIDRYYYENSDQPIDLTKSKNKPLVSGVADAVSSPLRESALMDISDMVKNL 853

  Fly   970 --RSMPLAS-PRRSASRSPATGSQQPPPSPTISPYDE--------SPQSKFLKYTELAKQL 1019
              |..|.:| |...:.:|.|.||........:||..:        :||...:...:.|..|
  Rat   854 TGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSL 914

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tioNP_001260679.1 zf-C2H2_2 <317..>344 CDD:289522 8/26 (31%)
C2H2 Zn finger 319..341 CDD:275371 8/21 (38%)
C2H2 Zn finger 428..450 CDD:275371 9/21 (43%)
zf-C2H2_4 927..949 CDD:290605 6/26 (23%)
Tshz1XP_038953268.1 C2H2 Zn finger 248..270 CDD:275371 9/21 (43%)
C2H2 Zn finger 309..331 CDD:275371 9/21 (43%)
homeodomain 892..960 CDD:238039 4/23 (17%)
zf-C2H2_2 976..>1066 CDD:403839
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 60 1.000 Inparanoid score I5308
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8976
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12487
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.150

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