DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tio and tshz3

DIOPT Version :10

Sequence 1:NP_524733.2 Gene:tio / 44272 FlyBaseID:FBgn0028979 Length:1024 Species:Drosophila melanogaster
Sequence 2:XP_004913607.2 Gene:tshz3 / 100491887 XenbaseID:XB-GENE-852851 Length:1077 Species:Xenopus tropicalis


Alignment Length:1092 Identity:204/1092 - (18%)
Similarity:341/1092 - (31%) Gaps:388/1092 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 PQSAAMAAYLAAAQQNHLLLTNPLAAAASLVQHA-TQQAVVEGEVES----PALDFSRKRPK-SH 156
            |:....|...|||     .:::.|.|||.:.:.. |:..:|:||..:    |..:|::..|. .|
 Frog     2 PRRKQQAPRRAAA-----YVSDELKAAALVDEDVETEDTLVDGEPSAKYACPEKEFTKNSPNYQH 61

  Fly   157 GDDDQEEDQEQDQEQEQEQEPDHDVQCDNGPLDLSVSTGKRQESVSPPARKIPRSISADYKSPLP 221
            ....:....|.|.:....:..|.....:      |.|....:||                |..|.
 Frog    62 SPAAEFSSHEMDSDSHVSETSDRMADFE------SCSIKNEEES----------------KESLA 104

  Fly   222 PGSWMPPINPYLAAVAAKTGGLGYSKLAPSEASKALEKMTEM--SRLETSPTAARSLGATSSVGA 284
            |                         |..|..|.:||:|..:  :.|..|..:..||....|...
 Frog   105 P-------------------------LEDSNVSDSLEQMKAVYNNFLSNSYWSNLSLNLHQSTSE 144

  Fly   285 GVPAGASSNSGGRHSA------W-------------------------------QSHWLNKGADT 312
            ...|.:||:|....|.      |                               ||..|.....|
 Frog   145 KNNASSSSSSSSSSSCGSGSFDWHQTAMAKTLQQVSQSRLLPEPSLFSTVQLYRQSSKLYGSIFT 209

  Fly   313 AKDVFKCVWCKQSFSTLANLTAHMKETQHCGVQIPSPLPTGGVGTPSAPPPTRLATSASNSACSS 377
            ....|:|..|..::.||..||.||.||.|                                   .
 Frog   210 GASKFRCKDCSAAYDTLVELTVHMNETGH-----------------------------------Y 239

  Fly   378 SSSSTSSSSNSSKSELNMLIKETMPLPRKLVRGQDVWLGKGAEQTRQILKCMWCGQSFRSLAEMT 442
            ...:..:.:|:.|       :.:.|..|.|:..:      |.|..:::||||:||.||.||.:::
 Frog   240 RDDNHETDNNNPK-------RWSKPRKRSLLEME------GKEDAQKVLKCMYCGHSFESLQDLS 291

  Fly   443 SHMQETQHYTNIISQEQI--ISWK--SGDERERPTNTGVPSTSTAAPSSPSCTAPS--------- 494
            .||.:|:||..:..:|.:  ::.|  ....::......:||:..:...:|..|.|.         
 Frog   292 VHMIKTKHYQKVPLKEPVTPVAAKIVPASRKKLSLELDLPSSPDSTGGTPKATNPDSNDALQKNS 356

  Fly   495 -------------------------VSAVLTCKVCDQAFGSLKELSTHMAQKSHY---------- 524
                                     .|.:|.|..|..:..:|::|:|||....|:          
 Frog   357 NPYITPNNRYGHQNGASYAWHFEARKSQILKCMECGSSHDTLQDLTTHMMVTGHFIKVTNSALKK 421

  Fly   525 ----KESPAPSAS---------PPAAGTGNPKRGRQNRNE--KRKKSLPVRKLLELERSGSNSSL 574
                .|||....|         |.||.|..|.   .|.|.  ..|.::.::|.::.::..::..:
 Frog   422 GKSVLESPVTPTSLIDEKVQSVPLAATTFTPP---VNNNSCLSPKLNVEIKKEVDKDKGITDDKI 483

  Fly   575 DSALKPLRDFAAATKITCEKCGSKIETALFVEHIRKCLGESIPIPPRRSNAGVDRLPSPSLGLGA 639
            ....|...|                |....|......|.|:            |...||..||  
 Frog   484 KDKDKTNED----------------EEKFDVSSKYHYLTEN------------DLEESPKGGL-- 518

  Fly   640 EKPPSVLNALEQLIEKSFESRTSRTMTHGGYSEAGTPLGASILKRLGIEDSSDYT--KPLMDAQA 702
                .:|.:||..:..:.....:.|.:.|||...........:.:|.:..|...|  ||:.    
 Frog   519 ----DILKSLENTVTSAINKAQNGTPSWGGYPSIHAAYQLPNMMKLSLGSSGKTTSLKPMY---- 575

  Fly   703 MHLLRSSFASRDRSASESSSASRVESSYTPDRQQATP------H--------------------K 741
                         .:||..|.::.:...:|..:|.:|      |                    |
 Frog   576 -------------GSSELMSPTKNQPIVSPPSRQTSPVPKTNFHAMEELVKKVTEKVAKVEEKMK 627

  Fly   742 SPDTPAPP-----PPPPPTIKAEPLEAEPL--VGCDREGCSPRQQIQVKKEFSMEACRESPRSVS 799
            .|:....|     |.|..:..:|.|:.:..  |....:..||..|        .::|:||| || 
 Frog   628 DPEGKFSPIKRATPSPSGSEISESLKGDMSNEVTFKSQQNSPVSQ--------KDSCKESP-SV- 682

  Fly   800 KSPAPQTERSPPDNGSLLALNSMFDQLSGVENSGNNNSGHCFNNNNSCSSVSAQKPKAHPLAALQ 864
                     .|.:||.        |.:..:..|.::::....::       ..::|..:||:|||
 Frog   683 ---------EPVENGK--------DHVKSIIGSLSSSTAIITDH-------PPEQPFVNPLSALQ 723

  Fly   865 KLCE------------TTDPPSTGLRSASSAGSSTASATLP--------------SANGNDLVAF 903
            .:..            ..||.|...:.::|.....|.||.|              ..|.:..:..
 Frog   724 SVMNIHLGKAAKPSLPALDPMSMLFKMSNSLAEKAAVATPPVQAKKIDHLDRYFYHVNNDQPIDL 788

  Fly   904 SWA-----CN--EAVLSASNGGSAGDSSIIKCSYCD--TPFASKGAYRHH-LSKVHFVKDAGEDS 958
            :..     |:  .|:||:::..||..||.:..:...  ..|.|....|.: ||.:         |
 Frog   789 TKGKSDKNCSLASALLSSTSTSSASSSSTVTTAKTSAVVSFMSNSPLRENALSDI---------S 844

  Fly   959 PRLKSPAVQSPRSMPLASPRRSASRSPATGSQQPPPSPTI--SPYDESPQSK 1008
            ..||:          |.....|.|.:|.:.|::.....|.  .|.:.:|..|
 Frog   845 DMLKN----------LTESHTSKSSTPTSISEKSDIDGTTIEEPEENTPAQK 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tioNP_524733.2 zf-C2H2 317..337 CDD:395048 8/19 (42%)
C2H2 Zn finger 319..341 CDD:275371 10/21 (48%)
C2H2 Zn finger 428..450 CDD:275371 11/21 (52%)
zf-C2H2_4 927..949 CDD:464025 5/24 (21%)
tshz3XP_004913607.2 C2H2 Zn finger 216..238 CDD:275371 10/21 (48%)
C2H2 Zn finger 277..299 CDD:275371 11/21 (52%)
homeodomain 888..956 CDD:238039
Blue background indicates that the domain is not in the aligned region.

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