DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment xmas and mcm3ap

DIOPT Version :9

Sequence 1:NP_001356948.1 Gene:xmas / 44271 FlyBaseID:FBgn0286809 Length:2079 Species:Drosophila melanogaster
Sequence 2:XP_005167925.1 Gene:mcm3ap / 436589 ZFINID:ZDB-GENE-040715-1 Length:2118 Species:Danio rerio


Alignment Length:1929 Identity:463/1929 - (24%)
Similarity:729/1929 - (37%) Gaps:610/1929 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 CRNIPELFLDKYVARSHFGRFGTLVNFVLRPRRMTCTVSYASEDEAARALLDGASFQGHLFDI-- 78
            |:|||.....|.:...|||.||.::....:|::....|.:.....||:|...|..||.:...|  
Zfish   485 CKNIPSNLNRKDLLMQHFGHFGKVLRVYSKPQKNLAVVHFQDHTSAAKAKKKGKLFQRNEIQIFW 549

  Fly    79 -----SYADNETAPAQKTEEWVDPDIQAELSALQSGWRNEYGSGKPIKKP---QNGSSGSGGSSM 135
                 |..|....|::..:...||:..:.|  |||         .||.||   .|..|.||  |:
Zfish   550 QRKKQSPGDKPARPSEIKDVIEDPESASAL--LQS---------PPIHKPLPRANPISMSG--SL 601

  Fly   136 LPAIPV--------------GPATAPVSRDRT--------PAQLRDLENMMRRPAHTSEEKFSVL 178
            ....|:              ||..: ||.:|:        |:.|:.|...:   |..:||::.:|
Zfish   602 TKGSPIKKSSIAKTLQFESEGPFES-VSEERSIERPINILPSVLQPLVGQV---AECAEERYRLL 662

  Fly   179 DARDKLLRL---NRTQHKLSGATQGHCADMCPEKERVLREFQRQVAYYELQPGSDELICHERALK 240
            :.|||:||.   .||...:|....|.|.||||||||.:||.:.|::.:|:.|.: |.:.|..|:|
Zfish   663 EQRDKILRQARPKRTDLDMSKVFVGTCPDMCPEKERYMRETRNQLSVFEVVPDT-EKVDHYAAIK 726

  Fly   241 QYSRSSADQETPLPHELRNETALHMTMSYLMHEIMDISERQDPQSHMGDWFHFVWDRTRSIRKEI 305
            :|||||||||.|||||||....|.|||.||:.:|||..|     .:..||:.|||:|||.|||:|
Zfish   727 EYSRSSADQEEPLPHELRPLPVLSMTMDYLVTQIMDQGE-----GNCRDWYDFVWNRTRGIRKDI 786

  Fly   306 TQQELCSLGAVKLVEQCARFHIHCAARLVDADPSVFDSKINAENLTKCLQTLKYMYHDLRIKGVP 370
            |||.||....|.|:|:|.|||||||..|.......||:|||.||:|||||:||.||.||..|.|.
Zfish   787 TQQHLCDPETVSLIEKCTRFHIHCAHHLCQEPMMSFDAKINNENMTKCLQSLKEMYQDLATKEVY 851

  Fly   371 CPKEAEFRGYIVLLNLADANFLWDIGQLPAELQSCPEVRQAIQFYLALQDTNFVRFFQLLADKDT 435
            ||||||||.|.||:.|.|.:.|.::.|...|::..|||..|:|.:.||...||||||:|::  ..
Zfish   852 CPKEAEFRQYNVLVKLNDGDILREVQQFRKEIRESPEVTFAVQVFAALNSNNFVRFFKLVS--AA 914

  Fly   436 SYLSACILVNYFTR-----LRVLGLHRLIQAYRSPRKDEVSSLPLSYIAELLSFASEQEAADFVQ 495
            ||||:|||..||.:     |::|.:...:.:.||      :..|:.....:|.|.:..||.:|:|
Zfish   915 SYLSSCILHRYFNQVRRQALKILNVAFTVGSQRS------TIFPVEDFVRMLMFRNATEATEFIQ 973

  Fly   496 HYGLQINEAGRVVLSRMHTVETEYKLPRQYEL-VEVKRVKSVGEVVSGEPL--PPRDLYLNHRPH 557
            .|||.::: |.|.|||....|.:|.||::..: :|.||...:||||:|.||  ||:     |.|.
Zfish   974 QYGLTVSD-GMVELSRTAYQEPDYSLPQKKSVAIEKKRTVLIGEVVNGGPLPNPPQ-----HSPV 1032

  Fly   558 NSFDDY--------------GMLKSIA-------------------------------------- 570
            .|||..              .:||:.|                                      
Zfish  1033 CSFDSNNKYTGDGLSSEPPPAVLKAPAERQIFMEPEPRPQVKTRLLAEPRLFMGLSEPVKADDTE 1097

  Fly   571 ------WTAKDQLAGMQQEEMQP---QMPSQPPAVSKHSDTLFKVPMQPDGTAAGFGVFAAAAVP 626
                  .||:..|..:||....|   ..|.:||:          .|.:|:.|.....:.|.....
Zfish  1098 ETGEKSQTAESTLPVVQQPIFPPILAPQPVRPPS----------PPPKPEPTYTDQDIMAEVDAV 1152

  Fly   627 PASSIDGFSFVLPKSRAQEFQEQAPATQQRRAQ---EEAKHQALQVAIAAAKKREAELMAIHEAK 688
            ....::.....:.:| |.|:...|.:......:   .|..||.|         ||.....|    
Zfish  1153 VNEVLEAEVSDVTRS-AAEYVSAALSASDSELEIVVSEVLHQLL---------REVSTSEI---- 1203

  Fly   689 VAEAERVRQQKLRERQEQQRRQQQELEEQRQRE----------QEKLQLEKERQLKLEQLFFVQQ 743
            :||.||:.::|   |:|::.|:::...:|...|          .|.::...|.:::|      ..
Zfish  1204 IAEKERIAEEK---RKEEEARRKEAFLQQFSAELCAKISDEVLTESIRATAEAEIRL------AL 1259

  Fly   744 QEREAHKQTRTLELYQEIFQDTLAEICQSEFMSHSRACRSYESMLDSITRDLVERQMEQSIYELG 808
            :|:.|:....|.|..:.|.::||||...|                           :.|.|.:.|
Zfish  1260 EEKAAYIARCTAEECESIIEETLAEEVAS---------------------------IAQVILDEG 1297

  Fly   809 V--MRVCIRRWRKYRRTQQEKDTLFNQLPLSFGAENP---------------------EGVVN-- 848
            :  :|..|:|||.....:::........|.:.|..:|                     :|:||  
Zfish  1298 LRHIRKFIKRWRDVVAVRRQLKRQMRGFPAAPGCVDPQFKLKALVPSAPSNHCLDLLAQGMVNLG 1362

  Fly   849 ---------------KRSMEDSLRLSRRYRLGEPCDYGKLLAGLEEHSWLKLDLWHVLDKCLPVA 898
                           ::.....:::|..|.|           .:.|..|:.|||..::.:..|.|
Zfish  1363 NSGNMAVSCTSLLRMRQEAVHQMKVSYYYNL-----------LMSERVWMPLDLPTLVAESTPNA 1416

  Fly   899 QPGARRFYK-----------------------LLISLSGGQEGLQLNCDLDRGLLQQPQSPDARF 940
            ..  |.|:|                       |.:.|.||.|                 |.::..
Zfish  1417 PD--RIFWKATLLMPSSCDSDITFASRILTDWLEVKLGGGNE-----------------SEESEK 1462

  Fly   941 VDGGYIRGFSQGIGLSVMKIRDDDHD-----------WKATDLA------EANGIICLIGL---- 984
            ...|.::...  :..|:..||...|:           ..|.|..      |.:|...|:.|    
Zfish  1463 QSKGQVKTLC--VSHSLTNIRGQTHEVYISVKACHGPLSAEDQCLLEEQKELHGTNALLMLLPPV 1525

  Fly   985 ---------------DDIRLLPD--RLKPLLQASRCHD---VAVIVQHPANTAFVQPDIPLQELC 1029
                           :|:.||..  :|:.:.|||..|.   :||:|   |....  .|..|::..
Zfish  1526 NSAGQGEEEEEEEEEEDLPLLSALLQLRQVQQASCWHSPLPLAVVV---AGNQI--GDQGLEQAL 1585

  Fly  1030 LRSFNIFRLRKSGNNRQRLMIALESAVKFLAKATERKRVGHLHQVETR---------EYLL--VN 1083
            |    :..|.|.|...:.:.:.:.:.:..|..:.:...|  :..:..|         :.||  |.
Zfish  1586 L----LDMLVKDGLISEYIFVHIPATLNDLQGSEQMSHV--VRWLSARSPASPALSSQTLLQVVE 1644

  Fly  1084 LG--SELFRRLKYAAEHDTAIRSDTQL---NPQRCVDLFNEAVHRLQ-LVAGEDLSD--WPQFPE 1140
            ||  .|.:.||    :.|...|.:..|   :|:..|:|.|..:..|. :|:.|.||.  ||    
Zfish  1645 LGLCREFYSRL----QEDKLDRKNAGLPSQHPEPIVELCNSVLSFLSGVVSSEHLSALCWP---- 1701

  Fly  1141 ELRVFVQPLPIESSL--NTNRLEHFEPGWHLPERRQRIVQLLERCKLPKMPVLPRSSSLAEAQCQ 1203
                     |.|.||  |:..:.|  ..|:.||..|.:.:.:...:||:..:.|..:|.... |.
Zfish  1702 ---------PPEFSLPENSELIPH--QAWNSPEHLQWLRRSILSRQLPEWDLPPVDASWPHL-CA 1754

  Fly  1204 WVLDYAQ------------ISQQEDCVEQIALQAIKILQYDTDDYLN----------------FV 1240
            .:..|..            :|:.|:.:.::..|     ..|.|||..                .|
Zfish  1755 SIFQYVSQIPTSPLSQPILMSRLENLLRRVNYQ-----HADEDDYEKAGPSFHEIPWDDIICLCV 1814

  Fly  1241 EY-LAGERMQYILRQERNPPQG---IVYNTKTLKRRFLSAWYYEFREPQIYEPVPAEENAQMLEK 1301
            |: :....:..::.::.....|   :.:|..:||         .|:.|.|:  :.|.:.....::
Zfish  1815 EHRMKDWSLDTLVAKDALTDDGEILVYFNKDSLK---------SFQPPDIW--IEAVKQTYQEKR 1868

  Fly  1302 QPSSQAEVQQLDFDEITSKAEAVLKRFHQRQDERHTLRELNRSHKSRKRRDASDHKHAMSSLVSA 1366
            |.|           |:.....:...|.:.||       :|.:||...:.|...:.          
Zfish  1869 QAS-----------EVCKVKHSPATRLYLRQ-------KLFQSHIDIEERPTVED---------- 1905

  Fly  1367 LKAARSDYQGKSSAVCRLVAQMVEADQVKYQWTPNLTSLIDRKDASTRHQWRPHVNHSTRH-ARK 1430
                              .||:    .::.::...|:||.|....|.|      :...|:| |.:
Zfish  1906 ------------------TAQI----PIEQKFKQMLSSLRDMNAESQR------IGEQTQHRAGE 1942

  Fly  1431 LPVQSISFLSRCLAKKGEHAGLTSCVLSVKTRYAPKTLHGREL----LIWRQSSMRPLLLPSSNL 1491
            .|::..||                 .|:::...|..|.|.:|.    |:.:.||.|.:       
Zfish  1943 NPLRRSSF-----------------PLALRKHPAAGTAHIQETDVVELVGKVSSDRKM------- 1983

  Fly  1492 WTGVLSKRHYVPRLRPAEEDEEVERRAVPQLRITKEQSEEEE---HQLQRRKDGSRLRNECSEFY 1553
                  .|.:.    |......:..|....|...:|.:.|.:   .|::||.:...|    |...
Zfish  1984 ------NRMFA----PDSTQSPIMERLQHTLSTVQEMNAEGQRIGEQIRRRIEADAL----SSAS 2034

  Fly  1554 LPMGEQDYSEREEENRGHRQAYVPSELMTPELATKWQTTSVTDRDRQLLNLEQQMKTQPSVRMTT 1618
            ||:                  ::||.|:                            :.|.:.:||
Zfish  2035 LPL------------------FLPSTLL----------------------------SSPPLVLTT 2053

  Fly  1619 QTWFSGNHRRYRSRRSGAKRYHVVSELEG-WRRSSNHQPVPVFQ 1661
            .           .|.|.|.....:.:|:. ..|:...:|||:||
Zfish  2054 S-----------KRPSAAVHIQEMDDLDKIASRNDKSRPVPLFQ 2086

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
xmasNP_001356948.1 RRM_XMAS2 12..82 CDD:240903 20/72 (28%)
SAC3_GANP 200..503 CDD:335312 147/307 (48%)
DUF5401 <638..>827 CDD:340095 42/203 (21%)
mcm3apXP_005167925.1 NupH_GANP 2..310 CDD:293373
Nucleoporin_FG 3..81 CDD:290362
RRM_MCM3A_like 481..553 CDD:240889 19/67 (28%)
SAC3_GANP 738..962 CDD:281402 111/236 (47%)
CID_GANP 1226..1294 CDD:293371 16/100 (16%)
MCM3AP_GANP 1324..2114 CDD:293374 174/993 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 274 1.000 Domainoid score I1744
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1593971at2759
OrthoFinder 1 1.000 - - FOG0003569
OrthoInspector 1 1.000 - - oto41520
orthoMCL 1 0.900 - - OOG6_103177
Panther 1 1.100 - - LDO PTHR12436
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1280
SonicParanoid 1 1.000 - - X2919
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.950

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