DRSC/TRiP Functional Genomics Resources

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Protein Alignment sut3 and hmit-1.3

DIOPT Version :9

Sequence 1:NP_524731.1 Gene:sut3 / 44268 FlyBaseID:FBgn0028561 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_497725.2 Gene:hmit-1.3 / 175458 WormBaseID:WBGene00010811 Length:604 Species:Caenorhabditis elegans


Alignment Length:575 Identity:109/575 - (18%)
Similarity:228/575 - (39%) Gaps:134/575 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ADGKQGWTCLLVLICVCITVGTVIPVGYAFGVMNAPSAFI--RSWI--MESVLERYSSRLGDSQM 62
            :|.|.||  .:.::.....:|..: .||..|:::|...::  .|.|  ::||.:.          
 Worm    20 SDPKTGW--FVYMLAFSAVIGGFL-FGYDTGIVSAAMLYVPNASGIKPLDSVWQE---------- 71

  Fly    63 TIIMSTVVSIFLIGGMLGAPFAPIFSARLGRRGILTLSGLLLLVSCICQLFCRMANSIEMLLLGR 127
             ||:|....:..||.:...|.:..    |||:.|:..:.:...:..|   .|..|.:..:||:||
 Worm    72 -IIVSITPGVAAIGSLCSGPGSDF----LGRKKIIIGASVTFTIGAI---ICAAAWTKIILLIGR 128

  Fly   128 LIGGLAAALIYATQPMYLVELAPAELSGSVGVFTCIGLTGGIVLGQVF--SFDFLLGTEKLWPYA 190
            ::.|||........|:|:.|.:|:.:.|.:.....:.:|.|:|:..:.  :|.::...:..|...
 Worm   129 ILLGLAIGFASMIVPIYVSEASPSHIRGKLVTGFQLMITVGLVIANIIGGAFSYVDPDQVGWRLM 193

  Fly   191 LSGSAIFVLIGLAPIFWFPESPRFLMSQGRREKARVTLMRLRRDEGR-VNAEMAEFEVSSTDEGQ 254
            .:.:|:..:|......:.|||||:|...||..:||..|.|:...... |:.|:.|...|..:|.:
 Worm   194 FAFAAVPAIIQFVCFLFLPESPRWLYEHGRTVEAREVLTRIYNGHTEWVDYEINEISFSYEEELR 258

  Fly   255 V---------TMKQVLCNSKLKLPLFIVCSFHFVQQMSGISAIWFYSIEIFTQSGF-TAAVAMWL 309
            .         |:.::|....::..:.|.......||:|||:.:.:|:..|...:|. .....:|:
 Worm   259 AKAEHAGNGPTIIRILKTPHVRKAMIIGSLLQMFQQLSGINTVMYYTGNIIRSAGVKDNHTTIWI 323

  Fly   310 NFALGLLNFISALMGPWLMRSFNRRLMMTISCLCSAIFLV-----LLVVGLELMSTIHEFSFT-- 367
            :.....:||:...:...|:....||:::.:|.:...:||:     .|::..:.:.|..:.::|  
 Worm   324 SVGTSAINFLGTFIPIALVERVGRRVLLLVSMIGVILFLIAMGVSFLLINNDSLRTFDQQNYTLN 388

  Fly   368 --------------------------------------CIAFLS--------------------- 373
                                                  |:.|.|                     
 Worm   389 YNPSVKHAAKCLKYSNCDFCVTDENCGFCESKVAKKGYCLPFPSDDSSDYSATGICEFSNLTNNG 453

  Fly   374 -----------------------LYIITFNMGLGPTPYFIGSEIFETASRPSAMALGSFFNWLAN 415
                                   .|:::|:.|..|.|:.:.:|.:...:|.:|:::.:..||:.|
 Worm   454 TDFEWEDTYCHTKFTVLPIIIMVFYLLSFSAGYAPLPWVLNAEFYPLWARSTAVSVSTACNWIFN 518

  Fly   416 FVLNMIFPTLNSATGP----FVFLLCVVFCAYGFLLTYRYLPETRNRDAKDVAQL 466
            .::::.|.:|:.|...    |::..|.:   ...:..:.::|||:.....:|..|
 Worm   519 LIVSLTFLSLSQAATKYGTFFIYCGCTM---VALVFVFFFVPETKGYSIDEVEML 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sut3NP_524731.1 Sugar_tr 28..466 CDD:278511 103/547 (19%)
MFS 66..451 CDD:119392 89/490 (18%)
hmit-1.3NP_497725.2 MFS 34..558 CDD:421695 100/545 (18%)
MFS <190..>249 CDD:421695 17/58 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158110
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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