DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF5B and eRF3

DIOPT Version :9

Sequence 1:NP_001246599.1 Gene:eIF5B / 44261 FlyBaseID:FBgn0026259 Length:1144 Species:Drosophila melanogaster
Sequence 2:NP_001260415.1 Gene:eRF3 / 34658 FlyBaseID:FBgn0020443 Length:619 Species:Drosophila melanogaster


Alignment Length:582 Identity:125/582 - (21%)
Similarity:206/582 - (35%) Gaps:181/582 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   391 AQGLEIPDPNDKRPTRPGTRIRPNKKKGPKEEAAEEEAKAAEAEAQSAAAAAAAAAAEKAEEERV 455
            |||.....|:.:.||.......|              |..:.|...||.|||             
  Fly    87 AQGAGAAAPSAQPPTSSSNSASP--------------APGSPATTPSAGAAA------------- 124

  Fly   456 KESWDATDSEAEPEPEE--ETSQATNNGKTEAAEEENEDTDDDEDDDDDEDDSDDSDGDSDDSRE 518
                      |:|.|.:  ..|....|.:|:.|:..:.|......:|::.:|::.::|::  :.:
  Fly   125 ----------ADPTPIDGLNPSDKIANNETDPADSWDVDDAVITPEDEEVEDAEFTEGEA--TPK 177

  Fly   519 VSVLANDPESRRLRAEARILKRQAEAEKKRSTDELRAGVVCVLGHVDTGKTKI------------ 571
            ||                 .|:..:.|:.||..| ...|| .:||||.||:.|            
  Fly   178 VS-----------------KKKVVKVEENRSKRE-HVNVV-FIGHVDAGKSTIGGQIMSLTGMVD 223

  Fly   572 ---LDKLRRTHVQDSEAGGITQQIGATNVPIEAIKEQTKYVKAA-AGFEHRLPGLLIIDTPGHES 632
               |:|..|...:.|...........||   :..:::.|.|:.. |.||.......|:|.|||:|
  Fly   224 KRTLEKYEREAREKSRESWYLSWALDTN---QEERDKGKTVEVGRAFFETDRKHFTILDAPGHKS 285

  Fly   633 FSNLRNRGSSLCDIAILVVDIMHG-LEP------QTIESIQLLKKKKCPFIVAL-NKI-DRLYDW 688
            |......|::..|:|:||:....| .|.      ||.|...|.|......:|.| ||: |...:|
  Fly   286 FVPNMIGGAAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVVLVNKMDDPTVNW 350

  Fly   689 KQLARRDVRDVLKEQQSNTQLEFQQRTKDVILQFAEQ-GLNAALFYENTDPKTYISLVPTSAISG 752
            .|....:                   .||.||.:.:: |.|         |...::.:|.|.:||
  Fly   351 DQTRYNE-------------------CKDKILPYLKKLGFN---------PAKDLTFMPCSGLSG 387

  Fly   753 EGMGNLLFMIADFCQNMLAKRLMYSEELQATVLEVKALPGL-------------------GTTID 798
            .|:           ::.:.:.|.......|.:..:..||.|                   ||.:.
  Fly   388 YGL-----------KDQIPETLCPWYRGPAFIPFIDELPSLNRKSDGPFIMPIVDKYKDMGTVVM 441

  Fly   799 AILINGKLREGQTMVVAGTDGPIVTQIR---------SLLMPQPMKELRVKNAYVEYKEVK---- 850
            ..:.:|..|:||.::|.    |..||:.         .:....|.:.:::|...:|.::|.    
  Fly   442 GKVESGTARKGQNLLVM----PNRTQVAVDQLFSDDFEVTSVGPGENVKIKLKGIEEEDVSPGFV 502

  Fly   851 ---AAQGVKIAAKDLEKAIAGINLLIAHKPDEVEICTEEVARELKSALSHIKLAQTGVHVQA 909
               ||..:| ..|..:..:    :::.||.   .||..      .||:.||..|...|.|:|
  Fly   503 LCDAANPIK-TGKIFDAQV----VILEHKS---IICAG------YSAVMHIHCAAEEVTVKA 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF5BNP_001246599.1 PRK04004 553..1129 CDD:235195 93/418 (22%)
IF2_eIF5B 557..769 CDD:206674 58/237 (24%)
aeIF5B_II 779..889 CDD:293904 26/144 (18%)
IF-2 890..993 CDD:288813 8/20 (40%)
IF2_aeIF5B_IV 1016..1110 CDD:293911
eRF3NP_001260415.1 PAM2 12..28 CDD:284542
TEF1 191..619 CDD:227581 95/422 (23%)
EF1_alpha 197..416 CDD:206670 61/261 (23%)
eRF3_II 424..505 CDD:293906 14/84 (17%)
eRF3_C_III 511..617 CDD:294003 14/54 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464676
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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