DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ps and FUBP3

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_003925.1 Gene:FUBP3 / 8939 HGNCID:4005 Length:572 Species:Homo sapiens


Alignment Length:498 Identity:112/498 - (22%)
Similarity:175/498 - (35%) Gaps:149/498 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 HGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAI 333
            |..|....:..||....|.|||:|||.|:.:|.::|.:::::....   |..||.|::||:.|:|
Human    73 HQRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESS---GIPERPCVLTGTPESI 134

  Fly   334 MVVMEF---IMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEE 395
            ......   |:|:.|..|...|   |.||..|.:     :||:|.|..|::||:||..|||::|.
Human   135 EQAKRLLGQIVDRCRNGPGFHN---DIDSNSTIQ-----EILIPASKVGLVIGRGGETIKQLQER 191

  Fly   396 SG-SYVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTCLNVSYADVSGPVAN 459
            :| ..|.|...|.... .::.:.|.||....:.|.:|:|..|.|..|         ||..|...:
Human   192 TGVKMVMIQDGPLPTG-ADKPLRITGDAFKVQQAREMVLEIIREKDQ---------ADFRGVRGD 246

  Fly   460 FNPTGSPYATNQNAINSSTASLNSTLGTTIGGANSAASLLVNGTGINLSINLGSPNPAPNLAVAT 524
            |                     ||.:|               |..|.:|:        |..||..
Human   247 F---------------------NSRMG---------------GGSIEVSV--------PRFAVGI 267

  Fly   525 QLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQT 589
                   |..|.....:.:.|:....:......|:                              
Human   268 -------VIGRNGEMIKKIQNDAGVRIQFKPDDGI------------------------------ 295

  Fly   590 AAAASAATASNVFGAVGQVNLEQYAAAVASAAAASRPTQSQLDAAAVQFDPFRHLGSATAPAATP 654
                |...|:.|.|...:.   |:||.:.          |:|...|.:.|.|..|.:|.      
Human   296 ----SPERAAQVMGPPDRC---QHAAHII----------SELILTAQERDGFGGLAAAR------ 337

  Fly   655 VSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQH 719
                    |.....|..:....||:.:.            ...||....|.::|..|.::..|..
Human   338 --------GRGRGRGDWSVGAPGGVQEI------------TYTVPADKCGLVIGKGGENIKSINQ 382

  Fly   720 VSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKI 762
            .|||:|::.:..........|..||.|.|..|..|:.||::|:
Human   383 QSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKV 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 20/67 (30%)
PCBP_like_KH 368..433 CDD:239089 22/65 (34%)
KH-I 696..759 CDD:238053 18/62 (29%)
FUBP3NP_003925.1 KH-I 78..148 CDD:412160 22/72 (31%)
KH-I 159..241 CDD:412160 31/96 (32%)
KH-I 252..321 CDD:412160 19/145 (13%)
KH-I 356..424 CDD:412160 19/79 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 426..521 112/498 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141636
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.