DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and FUBP1

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:XP_011540693.1 Gene:FUBP1 / 8880 HGNCID:4004 Length:688 Species:Homo sapiens


Alignment Length:616 Identity:135/616 - (21%)
Similarity:216/616 - (35%) Gaps:177/616 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 PLSENGSPNGTPGAQTPTATASG-NTAAALASAAAAAAAATSGGNGSSITNCNSNNSSSSSNAQQ 232
            |...:||..|..|.    ....| |.|...|...|...||..||:..  |:.|||:.....   |
Human     8 PPPSSGSAGGGGGG----GGGGGVNDAFKDALQRARQIAAKIGGDAG--TSLNSNDYGYGG---Q 63

  Fly   233 QLQL----GNYKTNSCWCYGESVCSGI-------EVEIENNNNN------HIHHGETTYHMKILV 280
            :..|    |::.:.|...:.|.:.|..       :|..:|::..      |.....:....:..|
Human    64 KRPLEDGDGSWTSPSSTTHWEGMPSPFKDQPDAKKVAPQNDSFGTQLPPMHQQQSRSVMTEEYKV 128

  Fly   281 PAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMV---VMEFIMD 342
            |....|.|||:|||.|:.:|:::|.:::::....   |..||.|::||:.|::..   :::.|::
Human   129 PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG---GLPERSCMLTGTPESVQSAKRLLDQIVE 190

  Fly   343 KIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESG-SYVQISQKP 406
            |.|..|...:.  |......||      |::|.|.||::|||||..|||::|.:| ..|.|...|
Human   191 KGRPAPGFHHG--DGPGNAVQE------IMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP 247

  Fly   407 TDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYATNQ 471
            .:.. .::.:.|.||....:.|.:|:| :::.| |.|                |....:.|    
Human   248 QNTG-ADKPLRITGDPYKVQQAKEMVL-ELIRD-QGG----------------FREVRNEY---- 289

  Fly   472 NAINSSTASLNSTLGTTIGGANSAASLLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRG 536
                          |:.|||                  |.|...|.|..||..       |..|.
Human   290 --------------GSRIGG------------------NEGIDVPIPRFAVGI-------VIGRN 315

  Fly   537 SGYSETVTNEVVAALSVLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAAAASAATASNV 601
            ....:.:.|:.             |:.:.....:|                        .|...:
Human   316 GEMIKKIQNDA-------------GVRIQFKPDDG------------------------TTPERI 343

  Fly   602 FGAVGQVNLEQYAAAVASAAAASRPTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTA 666
            ....|..:..|:||.:.:                   |..|     :..|..|        |...
Human   344 AQITGPPDRCQHAAEIIT-------------------DLLR-----SVQAGNP--------GGPG 376

  Fly   667 TTGTATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKG 731
            ..|.......|..:..| ||.|   ...|..||....|.|:|..|.::..|...|||.:::.:..
Human   377 PGGRGRGRGQGNWNMGP-PGGL---QEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP 437

  Fly   732 IFAPGTRNRIVTITGQPSAIAKAQYLIEQKI 762
            ........::.||.|.|..|..|:.|||:||
Human   438 PPNADPNMKLFTIRGTPQQIDYARQLIEEKI 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 19/67 (28%)
PCBP_like_KH 368..433 CDD:239089 23/65 (35%)
KH-I 696..759 CDD:238053 17/62 (27%)
FUBP1XP_011540693.1 KH-I 119..193 CDD:412160 21/76 (28%)
KH-I 207..276 CDD:412160 26/76 (34%)
KH-I 297..364 CDD:412160 16/129 (12%)
KH-I 397..468 CDD:412160 21/73 (29%)
DUF1897 623..>643 CDD:401086
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141632
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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