DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ps and AT1G51580

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_175569.1 Gene:AT1G51580 / 841583 AraportID:AT1G51580 Length:621 Species:Arabidopsis thaliana


Alignment Length:626 Identity:133/626 - (21%)
Similarity:211/626 - (33%) Gaps:175/626 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 HMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLI------------- 326
            |.::|.||..:||||||||..|..||..||:::::  ..|....:.|||.||             
plant    20 HFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRV--IDDIPVPSEERVVLIIAPSGKKKDESNV 82

  Fly   327 -----TGSTE-----------------------AIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQ 363
                 .||.|                       |.|.::. :.::|....|...  ||.|.....
plant    83 CDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLR-VFERIVFGDDAAT--VDGDELDKG 144

  Fly   364 ERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQK--------PTDVSLQERCITIIG 420
            |.:...:::|..:....::.|||..|::|:|:||:.|:||..        |.||.:|     :.|
plant   145 ESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQ-----MNG 204

  Fly   421 DKENNKNACKMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSP--YATNQ----------NA 473
            ...:.|.|..::.:          ||..|.|..:.....|...|.|  |.:.:          |.
plant   205 KFSSVKKALLLVTN----------CLQESGAPPTWDECPFPQPGYPPEYHSMEYHPQWDHPPPNP 259

  Fly   474 INSSTASLN----------------STLGTTIGGANSAASLLVNGTGINLSINLGSPNPAPNLAV 522
            :.......|                ..:|:.||...:....|.|.:|.::.::..:.:....:.|
plant   260 MPEDVGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIV 324

  Fly   523 --ATQLLE-------------HIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHTNGA 572
              |.:.||             |.::...|...|..    |||.|.|.:.|  :|..:|    .|.
plant   325 ISARENLERRHSLAQDGVMRVHNRIVEIGFEPSAA----VVARLLVHSPY--IGRLLG----KGG 379

  Fly   573 H------STLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVN--LEQYAAAVASAAAASR-PTQ 628
            |      ...|..:.|...||.|...:.......|.|.:..|.  |.|....:..|....| |.|
plant   380 HLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQ 444

  Fly   629 SQLDAAAVQFDPFRHLGSATAPAATPVSLNN-------------NSFGLTATTGTATTAQLGGLS 680
            ...........|:........|...|.|.:.             :..|.....|.........:|
plant   445 GMGGPPPPFMGPYPEPPPPFGPRQYPASPDRYHSPVGPFHERHCHGPGFDRPPGPGFDRPPSPMS 509

  Fly   681 KSPTPG----------------------DLSSKD----SKNVE--VPEVIIGAILGPSGRSLVEI 717
            .:|.||                      .:.|::    |.|||  :|:..:|.:.|.:..:|..|
plant   510 WTPQPGIDGHPGGMVPPDVNHGFALRNEPIGSENPVMTSANVEIVIPQAYLGHVYGENCSNLNYI 574

  Fly   718 QHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLI 758
            :.||||||.:...   ..||...:|.::|.......||.|:
plant   575 KQVSGANVVVHDP---KAGTTEGLVVVSGTSDQAHFAQSLL 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 28/105 (27%)
PCBP_like_KH 368..433 CDD:239089 19/72 (26%)
KH-I 696..759 CDD:238053 20/65 (31%)
AT1G51580NP_175569.1 KH-I 21..83 CDD:412160 22/63 (35%)
KH-I_PEPPER_rpt2_like 149..221 CDD:411888 20/86 (23%)
KH-I_PEPPER_rpt1_like 275..343 CDD:411887 10/67 (15%)
KH-I 361..433 CDD:412160 19/77 (25%)
KH-I 551..616 CDD:412160 20/65 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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