DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and HEN4

DIOPT Version :10

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_001190612.1 Gene:HEN4 / 836560 AraportID:AT5G64390 Length:866 Species:Arabidopsis thaliana


Alignment Length:555 Identity:117/555 - (21%)
Similarity:206/555 - (37%) Gaps:168/555 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   256 EVEIENNNNNHIHHGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTT 320
            |||:.|.:          ...|||.....:|.:||.||:.:..|..:|||.:.:..:.|   ...
plant   444 EVEVGNQD----------VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLD---DCE 495

  Fly   321 ERVCLITGS----------TEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPN 375
            ||:..:|.|          .:|||::...:.:.      .||||:|...:.:    ...:::||.
plant   496 ERLIAVTASENPECQSSPAQKAIMLIFSRLFEL------ATNKILDNGPRSS----ITARLVVPT 550

  Fly   376 STAGMIIGKGGAFIKQIKEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKIV 437
            |..|.::||||..:.::::.:|:.:||   .|.|..:|..::.:.|.|:..|.:.|...|.|::.
plant   551 SQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLR 615

  Fly   438 EDPQSGTCLNVSYADVSGPVA--------NFNP--TGSPYATNQNAINSSTASLNSTLGTTIGGA 492
            :...|.:..| |.|..|..:.        :.||  .||..:.:..|.|||:....|. .:.:.|:
plant   616 DSVFSNSMKN-SLAKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSE-DSFLSGS 678

  Fly   493 NSAASLLVNGTGINLSINLGS------PNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAAL 551
            :|:         :|.|.::|:      .:|.|:....:            :|||..         
plant   679 HSS---------VNYSRSVGTDPYIRPEDPFPDRFNPS------------AGYSHN--------- 713

  Fly   552 SVLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAA 616
                    .|....:.|::.:|..                                         
plant   714 --------FGRRFTMDHSDNSHHL----------------------------------------- 729

  Fly   617 VASAAAASRPTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGL-TATTGTATTAQLGGLS 680
               ..|.||..                   |:.|.|.|..|::.|.|| :|..|..    ||.|.
plant   730 ---TEAPSRLW-------------------ASPPPAAPRGLSDASGGLSSARAGHV----LGSLH 768

  Fly   681 -----KSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNR 740
                 .|.....:.:..:..:.||...:..:.|..|.:|.:::.:|||.|.|.:..:   ||.:|
plant   769 ARLVFSSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPL---GTSDR 830

  Fly   741 IVTITGQPSAIAKAQYLIEQKINEEETKRARQIPL 775
            |:.|:|.|.....||.|:...|...||..:::..|
plant   831 IIVISGTPDQTQAAQNLLHAFILTGETSLSKKYNL 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 KH-I_NOVA_rpt1 274..345 CDD:411863 20/80 (25%)
KH-I_NOVA_rpt2 367..436 CDD:411864 20/71 (28%)
KH-I_NOVA_rpt3 694..762 CDD:411807 20/67 (30%)
HEN4NP_001190612.1 KH-I_PEPPER_rpt1_like 46..106 CDD:411887
KH-I_PEPPER_rpt2_like 151..222 CDD:411888
KH-I_PEPPER_rpt1_like 451..519 CDD:411887 18/80 (23%)
KH-I_PEPPER_rpt2_like 543..615 CDD:411888 20/71 (28%)
KH-I_HEN4_like_rpt5 787..852 CDD:411890 20/67 (30%)
Blue background indicates that the domain is not in the aligned region.

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