DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and AT5G15270

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_197031.3 Gene:AT5G15270 / 831379 AraportID:AT5G15270 Length:548 Species:Arabidopsis thaliana


Alignment Length:538 Identity:110/538 - (20%)
Similarity:192/538 - (35%) Gaps:182/538 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   267 IHHGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLI----- 326
            |...:|.:  :.|.|....|::||:||:.:..|:.||.:::::.::   .||..|||..|     
plant    45 IDRDDTVF--RYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEA---IPGCDERVITIYSPSD 104

  Fly   327 ----TGSTEAIMVVMEFIMDKIREKPDLTNKIV--DTDSKQTQERDKQV--KILVPNSTAGMIIG 383
                .|..|.::...:..:.:|.:      ::|  |..|:.:.|.:|||  |:|||:...|.|:|
plant   105 ETNAFGDGEKVLSPAQDALFRIHD------RVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILG 163

  Fly   384 KGGAFIKQIKEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTC 445
            :||..::.|:.|:|:.::|   ...|......:..|.|.|:....|.|...|.|::.|:|     
plant   164 RGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENP----- 223

  Fly   446 LNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIGGANSAASLLVNGTG---INL 507
                                  :.:||.::||             |...|.||:.:..|   :.|
plant   224 ----------------------SRSQNLLSSS-------------GGYPAGSLMSHAGGPRLVGL 253

  Fly   508 SINLGS----------P--NPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVL 560
            :..:||          |  .|..|...||:....:             .:.|....||:.|.|.|
plant   254 APLMGSYGRDAGDWSRPLYQPPRNDPPATEFFIRL-------------VSPVENIASVIGKGGAL 305

  Fly   561 GMGVGVSHTNGAHSTLGNFLGVTTLDQQTAAAA---SAATASN---VFGAVGQVNLEQYAAAVAS 619
                                 :..|.|:|.|..   |:.|..|   :..:..:|..:.|:..: .
plant   306 ---------------------INQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTI-E 348

  Fly   620 AAAASRPTQS---QLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSK 681
            |....:|..|   :.|:..|.|                                 ||..|     
plant   349 AVMRLQPKCSDKVERDSGLVSF---------------------------------TTRLL----- 375

  Fly   682 SPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIF--APGTRNRIVTI 744
                            ||...||.|||..|..:.|::.::.||::|..|...  .....:.:|.|
plant   376 ----------------VPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQI 424

  Fly   745 TGQPSAIAKAQYLIEQKI 762
            :|:.....:|...|..::
plant   425 SGELDVAKEALIQITSRL 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 18/73 (25%)
PCBP_like_KH 368..433 CDD:239089 21/69 (30%)
KH-I 696..759 CDD:238053 17/64 (27%)
AT5G15270NP_197031.3 KH-I_PEPPER_rpt1_like 49..124 CDD:411887 19/79 (24%)
KH-I_PEPPER_rpt2_like 148..219 CDD:411888 21/70 (30%)
KH-I_PEPPER_rpt1_like 283..351 CDD:411887 16/102 (16%)
KH-I_PEPPER_rpt2_like 371..443 CDD:411888 21/93 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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