DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ps and AT5G09560

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_001318518.1 Gene:AT5G09560 / 830815 AraportID:AT5G09560 Length:600 Species:Arabidopsis thaliana


Alignment Length:558 Identity:101/558 - (18%)
Similarity:181/558 - (32%) Gaps:209/558 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 KILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSH-DFYPGTTERVCLITGSTEAI-MVVMEF 339
            :||.....:|.:|||.|..:..|.|.|.:.:.:.|:. |..|   .|:..|.|...:: .|.:..
plant    33 RILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSP---YRIIKIFGHVGSVSRVKLGV 94

  Fly   340 IMDKIREKPDLTNKIVDTDSKQTQERDKQV--------------------------KILVPNSTA 378
            |::.:..:           .|:.||::.:|                          .:|:..|..
plant    95 IVNNVSNR-----------EKKEQEQEVEVSRAQYALIRVFEALNFGDCTSSTVSCNLLMEGSHV 148

  Fly   379 GMIIGKGGAFIKQIKEESGSYVQ-------ISQKPTDVSLQERCITIIGDK-----------ENN 425
            ..:|||.|..:::|.||:|..||       |...|.||.|:     |.|::           .:.
plant   149 VTVIGKNGELMQRILEETGCNVQLRSHDLSICTNPGDVVLK-----IEGNRLSAVMKALVSISSR 208

  Fly   426 KNACKMI---------------------------------LSKIVEDPQSGTCLNVSYADVSGPV 457
            ..||..|                                 |.:.||..|....:...:..::.|.
plant   209 LQACPPISTASLHAEAVPDALRRPMEYRSQQYREVDPHGSLHRHVEISQEDALVRPFFRTITQPR 273

  Fly   458 ANFNP------------TGSPYATNQNAINSSTASLNSTLGTTIGGANSAASLLVNGTGI-NLSI 509
            .::.|            :.:|..|.:..:.:|...:.. :...|..:|.:||:::....: :.||
plant   274 IDYLPHPSYDHRLITSASKNPPVTIKQPLQASKDDIRQ-VDLKILCSNESASVVIKTRSVTDASI 337

  Fly   510 NLGSPNPAPN-----------------------LAVATQLLEHIKVAMRGSGYSETVTNEVVAAL 551
            ::|..:|..:                       :.|.:.:.|:....:..||.:.::|..:|.  
plant   338 SVGDRHPDCDERLVTITAFEKTKDITSESQRALVLVFSNMYENATAKVLDSGLTSSITARLVV-- 400

  Fly   552 SVLAKYGVLGMGVGVSHTNGAHSTLGNFLGV-TTLDQQTAAAASAATAS---------------- 599
                            .:|..:..||....: ||:.|:|.|..:.....                
plant   401 ----------------RSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVSENNQVVQIS 449

  Fly   600 ----NVFGAVGQVNL--------------EQYAA--------AVASAAAASRPT---QSQLDAAA 635
                ||..|:.||..              .|||.        .:.|..|...||   .|.:|.. 
plant   450 GEFPNVREAINQVTSMLREDLINQSFQRGSQYAVNYSEDPFPELFSPTAGYTPTFGRSSTMDPN- 513

  Fly   636 VQFDPFRHLGSATA------PAATPVSLNNNSFGLTAT 667
               |.|.:...|::      |.|.|.|:|:.|.||.:|
plant   514 ---DIFHYSSQASSRLWESPPPAAPRSVNDGSGGLFST 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 17/64 (27%)
PCBP_like_KH 368..433 CDD:239089 23/141 (16%)
KH-I 696..759 CDD:238053
AT5G09560NP_001318518.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.