DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and AT4G18375

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_193572.1 Gene:AT4G18375 / 827566 AraportID:AT4G18375 Length:606 Species:Arabidopsis thaliana


Alignment Length:611 Identity:122/611 - (19%)
Similarity:227/611 - (37%) Gaps:199/611 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 NNSSSSSNAQQQLQLGNYKTNSCWCYGESVCSGIEVEIENNNNNHIHHGETTYHMKILVPAVASG 286
            |||.|:.|.::::                            :::.|:..|...: :||.|....|
plant    13 NNSESNRNQKRRI----------------------------SHDKINRDELVVY-RILCPIDVVG 48

  Fly   287 AIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGST--------------------- 330
            .:|||.|:.|.:::.:|.|::|:   .|...|.::||..|..|.                     
plant    49 GVIGKSGKVINAIRHNTKAKIKV---FDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQ 110

  Fly   331 EAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEE 395
            :|::.|.:.|:....|....||  ||.|.      :|:.::|||.|.:..:|||.|..||:|:..
plant   111 DALLKVYDAIVASDEENNTKTN--VDRDD------NKECRLLVPFSQSSSLIGKAGENIKRIRRR 167

  Fly   396 SGSYVQISQK----PTDVSLQE--RCITIIGDKENNKN---ACKMILSKIVEDPQSGTCLNVSYA 451
            :.:.|::..|    |:.|...|  ..:.|.|:.|:.|.   |...|:.||  :|:....|:.:..
plant   168 TRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKI--NPRENIPLDSTSQ 230

  Fly   452 DVSGPVAN-----------FNPTGSPYATNQNAINSSTASLNS-----TLGTTIGGANSAASLLV 500
            ||  |.|:           :..||  :.:||:.|....|.:.|     ::....|.|.:||    
plant   231 DV--PAASVIVPSDLSNSVYPQTG--FYSNQDHILQQGAGVPSYFNALSVSDFQGYAETAA---- 287

  Fly   501 NGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVG 565
                          ||.|..|.:..:..    ...||..||.:..:|:..|..:.:  |:|.   
plant   288 --------------NPVPVFASSLPVTH----GFGGSSRSEELVFKVLCPLCNIMR--VIGK--- 329

  Fly   566 VSHTNGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVASAAAASRPTQSQ 630
                           |.:|:.:...|:.|....::.....|    :.....:.:|..:....:|.
plant   330 ---------------GGSTIKRIREASGSCIEVNDSRTKCG----DDECVIIVTATESPDDMKSM 375

  Fly   631 LDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSKDSKN 695
            ...|.:....:                                              ::.:|::|
plant   376 AVEAVLLLQEY----------------------------------------------INDEDAEN 394

  Fly   696 VE----VPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQY 756
            |:    |...:||.::|.||..:.||:..:.||:.|||      |.::.:|.::|:.|::..|..
plant   395 VKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK------GKKDDLVEVSGEVSSVRDALI 453

  Fly   757 LI-----EQKINEEETKRARQIPLTT 777
            .|     |..:.::::...|:.|..|
plant   454 QIVLRLREDVLGDKDSVATRKPPART 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 20/85 (24%)
PCBP_like_KH 368..433 CDD:239089 21/73 (29%)
KH-I 696..759 CDD:238053 20/71 (28%)
AT4G18375NP_193572.1 PCBP_like_KH 37..>85 CDD:239089 16/51 (31%)
PCBP_like_KH 140..211 CDD:239089 21/70 (30%)
PCBP_like_KH 313..369 CDD:239089 10/79 (13%)
PCBP_like_KH 397..456 CDD:239089 18/64 (28%)
KH-I 538..600 CDD:238053
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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