DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and AT2G25970

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_180167.1 Gene:AT2G25970 / 817137 AraportID:AT2G25970 Length:632 Species:Arabidopsis thaliana


Alignment Length:643 Identity:136/643 - (21%)
Similarity:217/643 - (33%) Gaps:184/643 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 YSLAVHSYQKQIESPANP------------SHVPHHQMD------LSPLSENGSPNGTPGAQTPT 186
            ||...:|.:::.|.|..|            ..:|...:|      |.|.|.|..|......|...
plant     7 YSSDTYSNKRKYEEPTAPPPSTRRPTGFSSGPIPSASVDPTAPTGLPPSSYNSVPPPMDEIQIAK 71

  Fly   187 ATASGNTAAALASAAAAAAAATSGGNGSSITNCNSNNSSSSSNAQQQLQLGNYKTNSCWCYGESV 251
            ..|....|..|.||.|.....   .||:|. :...|...||..::.:...|...::....||.  
plant    72 QKAQEIAARLLNSADAKRPRV---DNGASY-DYGDNKGFSSYPSEGKQMSGTVPSSIPVSYGS-- 130

  Fly   252 CSGIEVEIENNNNNHIHHGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFY 316
                            ..|.|   .||.:|.:..|.|||||||||..||..:||::::::..|..
plant   131 ----------------FQGTT---KKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDAD 176

  Fly   317 PGTTERVCLITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQT-------------QERDKQ 368
            |....|...:||:.:.|....:.|.|.::|          .::..|             |....|
plant   177 PNCATRTVDLTGTPDQISKAEQLITDVLQE----------AEAGNTAGSGGGGGRRMGGQAGADQ 231

  Fly   369 VKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQI--SQKPTDVSLQERCITIIGDKENNKNACKM 431
            ..:.:||:..|:||||||..||.::.::|:.:|:  ...|......||.:.|.|..|..::| |.
plant   232 FVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDGITEQIEHA-KQ 295

  Fly   432 ILSKIV--EDPQSGTCLNVSYADVSG----PVANFNPTG-------------------------S 465
            ::::|:  |:....:.:...|....|    |.:::.|.|                         |
plant   296 LVNEIISGENRMRNSAMGGGYPQQGGYQARPPSSWAPPGGPPAQPGYGGYMQPGAYPGPPQYGQS 360

  Fly   466 PYAT----------NQNAINSSTASL---------NSTLGTTIGGANSAASLLVNGTGINLSINL 511
            ||.:          :|:::..|..|.         ..:...:.||:::..:   :.||.|     
plant   361 PYGSYPQQTSAGYYDQSSVPPSQQSAQGEYDYYGQQQSQQPSSGGSSAPPT---DTTGYN----- 417

  Fly   512 GSPNPAPNLAVATQLLEHIK-VAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHTNGAHST 575
                          ..:|.. ....|.||.:    :...|.:...:.| .|...|.....|    
plant   418 --------------YYQHASGYGQAGQGYQQ----DGYGAYNASQQSG-YGQAAGYDQQGG---- 459

  Fly   576 LGNFLGVTTLDQQTAAAASAATASNV------FGAVGQVNLEQYAAAVASAAAASRPTQSQLDAA 634
                .|.||...|...|:.||..|:.      :|..||                ..|.|.....|
plant   460 ----YGSTTNPSQEEDASQAAPPSSAQSGQAGYGTTGQ----------------QPPAQGSTGQA 504

  Fly   635 AVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSP-TPGDLSSK 691
            .....|....|.::.|||.    .|:.:|.........|  .|...:|| .||...|:
plant   505 GYGAPPTSQAGYSSQPAAA----YNSGYGAPPPASKPPT--YGQSQQSPGAPGSYGSQ 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 23/64 (36%)
PCBP_like_KH 368..433 CDD:239089 22/66 (33%)
KH-I 696..759 CDD:238053
AT2G25970NP_180167.1 KH_1 137..202 CDD:365809 24/64 (38%)
KH_1 233..299 CDD:365809 21/66 (32%)
PRK07764 <421..598 CDD:236090 37/171 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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