DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ps and AT2G22600

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_850026.1 Gene:AT2G22600 / 816791 AraportID:AT2G22600 Length:632 Species:Arabidopsis thaliana


Alignment Length:566 Identity:119/566 - (21%)
Similarity:204/566 - (36%) Gaps:171/566 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 GAIIGKGGETIASLQKDTGARVKMSKSHDFYP----GT-TERVCLITGST----EAIMVVMEFIM 341
            ||::|.||:.:..:::::||.:::      .|    || .:.:..|||..    :|:::|..:|.
plant   152 GAVLGLGGKNVEWMRRNSGAMIRV------LPPPICGTKNDELIQITGDVLAVKKALVMVSSYIQ 210

  Fly   342 ----------------------DKIREKPD-------------------LTNKIVDTDSKQTQER 365
                                  |...|.|.                   .:|:.:..|...:.||
plant   211 NNAPLNGYPPPLSIKGYESLSTDGNSEDPHSEFFPNLRSSSLSNATEIVASNRHLPYDGGNSTER 275

  Fly   366 DKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKEN------ 424
            ....||:..:..||.||||.|..|:.::.|:|:.:.:. .|..|| .||.:| :..:||      
plant   276 KVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVG-APLKVS-GERVVT-VSARENLESRYS 337

  Fly   425 -NKNACKMILSKIVE-DPQSGTCLNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGT 487
             .:||..::.::.|| |.:.|                ..|     ..:..||..:...:.|....
plant   338 HAQNALALVFARSVEIDVEKG----------------LRP-----GLHNGAIVKTKLLVPSHFAN 381

  Fly   488 TIGGANSAASLLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAALS 552
            :..|..:..:::..|..:::|             |..|:||.|         ||   ||||  :.
plant   382 SFNGNGNREAIIATGADVHIS-------------VGNQVLEWI---------SE---NEVV--IE 419

  Fly   553 VLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVG---QV-NLEQY 613
            :..:|         ||...|.:.:.:.|....|.:: ......|..||.:.:.|   |: ||:  
plant   420 IKGEY---------SHVQKALTHVSSKLRENLLPKK-VLGEMRARVSNPYESAGGRSQIYNLQ-- 472

  Fly   614 AAAVASAAAASRPTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNN-------------NSFGLT 665
                .|...|||.....:.||.......|       ..|..:..|:             |.|.|.
plant   473 ----PSQQDASRGDSLSVSAAVPDLKMVR-------SGAEVLKSNSVMHTEVLKEVDELNDFTLP 526

  Fly   666 ATTGTATTAQLGGLSKSPTPGDLSS--KDSKNVEVPEV---------IIGAILGPSGRSLVEIQH 719
            .:.......|.....:..:.||:||  ..||.|.|.::         .:|::.|..|..:..:|.
plant   527 QSLLEEDLTQGMKQLQMSSNGDVSSLPPRSKGVSVRKITLELAVEKDALGSLYGRDGTGVDNLQQ 591

  Fly   720 VSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKINEE 765
            :|||||.:..     |......|.|:|.|.....|..|||..:.::
plant   592 ISGANVDVKD-----PTGTEATVLISGNPEQARTAMSLIESILTDQ 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 15/62 (24%)
PCBP_like_KH 368..433 CDD:239089 22/71 (31%)
KH-I 696..759 CDD:238053 18/71 (25%)
AT2G22600NP_850026.1 PCBP_like_KH 27..86 CDD:239089
KH-I 149..206 CDD:381803 14/59 (24%)
PCBP_like_KH 278..347 CDD:239089 22/71 (31%)
KH 563..629 CDD:197652 18/70 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.