DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and pcbp2

DIOPT Version :10

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_001039068.1 Gene:pcbp2 / 733863 -ID:- Length:362 Species:Xenopus tropicalis


Alignment Length:428 Identity:96/428 - (22%)
Similarity:142/428 - (33%) Gaps:171/428 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   357 TDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQIS--QKPTDVSLQERCITII 419
            |:|..|.:....::::||.|..|.:|||||:.||:|:|.:|:.||::  ..|...   ||.:||.
 Frog     2 TNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST---ERAVTIS 63

  Fly   420 GDKENNKNACKMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNST 484
            |..:......|.|...::|.|..|..:.......|||:.        :|                
 Frog    64 GTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASGPII--------FA---------------- 104

  Fly   485 LGTTIGGANSAASLLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVA 549
                 ||...|.::|.:.....:   |..|.|||..|:..|.                       
 Frog   105 -----GGQVRAETILASAGNHTV---LAQPQPAPAFAIQGQY----------------------- 138

  Fly   550 ALSVLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYA 614
                                                                             
 Frog   139 ----------------------------------------------------------------- 138

  Fly   615 AAVASAAAASRPTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSF-GLTATTGTATTAQLGG 678
                   |...|..::|...|:|..||..||..|.           .| ||.||           
 Frog   139 -------AIPHPDLTKLHQLAMQHTPFTPLGQTTP-----------GFPGLDAT----------- 174

  Fly   679 LSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVT 743
               |||       .|..:.:|..:||.|:|..|..:.||:.:|||.::|:..   :.|...|.||
 Frog   175 ---SPT-------SSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANA---SEGNGERQVT 226

  Fly   744 ITGQPSAIAKAQYLIEQKINEEETKRARQ-IPLTTVVN 780
            |||.|:.|:.|||||...:  |..|.:.| ..:||.|:
 Frog   227 ITGSPANISLAQYLINASL--EMAKLSTQTASVTTPVD 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 KH-I_NOVA_rpt1 274..345 CDD:411863
KH-I_NOVA_rpt2 367..436 CDD:411864 24/70 (34%)
KH-I_NOVA_rpt3 694..762 CDD:411807 26/67 (39%)
pcbp2NP_001039068.1 KH-I_PCBP3_rpt2 7..85 CDD:411947 26/80 (33%)
KH-I 170..244 CDD:469614 34/97 (35%)
Blue background indicates that the domain is not in the aligned region.

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