DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ps and Pcbp3

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:XP_006513979.1 Gene:Pcbp3 / 59093 MGIID:1890470 Length:394 Species:Mus musculus


Alignment Length:527 Identity:125/527 - (23%)
Similarity:194/527 - (36%) Gaps:187/527 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   268 HHGE-----------------TTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDF 315
            ||.|                 .|..:::|:.....|:||||.|||:..:::::|||:.:|:.:  
Mouse    23 HHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-- 85

  Fly   316 YPGTTERVCLITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGM 380
               ..||:..|||.|:||......|..|..|  |:.|.:  ::|..|.:....::::||.|..|.
Mouse    86 ---CPERIVTITGPTDAIFKAFAMIAYKFEE--DIINSM--SNSPATSKPPVTLRLVVPASQCGS 143

  Fly   381 IIGKGGAFIKQIKEESGSYVQIS--QKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSG 443
            :|||||:.||:|:|.:|:.||::  ..|...   ||.:||.|..:......|.|...::|.|..|
Mouse   144 LIGKGGSKIKEIRESTGAQVQVAGDMLPNST---ERAVTISGTPDAIIQCVKQICVVMLESPPKG 205

  Fly   444 TCLNVSYADVSGPVANFNPTGSPYATNQ---NAINSSTASLNSTLGTTIGGANSAASLLVNGTGI 505
            ..:.......|.||.        :|..|   :.:.:|||                          
Mouse   206 ATIPYRPKPASTPVI--------FAGGQVRADPLAASTA-------------------------- 236

  Fly   506 NLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHTN 570
            |||:                ||:|                      ..|..|.:.|         
Mouse   237 NLSL----------------LLQH----------------------PPLPAYTIQG--------- 254

  Fly   571 GAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVASAAAASRPTQ-SQLDAA 634
                                                     ||        |...|.| ::|...
Mouse   255 -----------------------------------------QY--------AIPHPDQLTKLHQL 270

  Fly   635 AVQFDPFRHLGSATAPA----ATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSKDSKN 695
            |:|..||..||. |.||    ..|:..:..:..|        ..|..||..||      ...:..
Mouse   271 AMQQTPFPPLGQ-TNPAFPGEKLPLHSSEEAQNL--------MGQSSGLDASP------PASTHE 320

  Fly   696 VEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQ 760
            :.:|..:||.|:|..|..:.||:.:|||.::|:..   ..|:..|.:||||.|:.|:.|||||..
Mouse   321 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA---TEGSSERQITITGTPANISLAQYLINA 382

  Fly   761 KINEEET 767
            ::..|.|
Mouse   383 RLTSEVT 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 21/64 (33%)
PCBP_like_KH 368..433 CDD:239089 23/66 (35%)
KH-I 696..759 CDD:238053 24/62 (39%)
Pcbp3XP_006513979.1 PCBP_like_KH 47..108 CDD:239089 21/65 (32%)
PCBP_like_KH 131..195 CDD:239089 23/66 (35%)
KH-I 318..380 CDD:238053 23/64 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831584
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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