DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and igf2bp1

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_001070027.2 Gene:igf2bp1 / 558182 ZFINID:ZDB-GENE-060929-1258 Length:598 Species:Danio rerio


Alignment Length:633 Identity:113/633 - (17%)
Similarity:194/633 - (30%) Gaps:271/633 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 PHHQMDL--SPLSENGSPNGTPGAQTPTATASGNTAAALASAAAAAAAATSG----GNGSSITNC 219
            ||.|.::  ..|::.|:........|.:.||..|........|..|....:|    .|...::..
Zfish    90 PHLQWEVLDGLLAQYGTVENCEQVNTDSETAVVNVTYGTREQARQAIQKLNGYQFDNNALRVSYI 154

  Fly   220 NSNNSSSSS---------------NAQQQLQLGNYKTNSCWCYGESVCSGIEVEIENNNNNHIHH 269
            ...||...|               ...:|:..|               |||..:          |
Zfish   155 PDENSEVDSQRGPDNGRRPGYGPRGTSRQMSPG---------------SGIPSK----------H 194

  Fly   270 GETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIM 334
            ......:::|||....||||||.|.||.::.|.|.:::.:.:..:  .|..|:...|..:.|...
Zfish   195 QHADIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN--AGAAEKPISIHSTPEGCS 257

  Fly   335 VVMEFIMDKIREKPDLTNKIVDTDSKQTQERDK-QVKILVPNSTAGMIIGKGGAFIKQIKEESGS 398
            .....|::           |::.::|.|:..|: .:|:|..|:..|.:|||.|..:|::::::.:
Zfish   258 AACRMILE-----------IMNQEAKDTKTADEVPLKVLAHNNFVGRLIGKEGRNLKKVEQDTDT 311

  Fly   399 YVQISQKPTDVSL--QERCITIIGDKENNKNAC----KMILSKIVEDPQSGTCLNVSYADVSGPV 457
            .:.||.. .|::|  .||.||:.|..|    ||    :.|:.|:.|                   
Zfish   312 KITISPL-QDLTLYNPERTITVKGSIE----ACCLAEQEIMKKVRE------------------- 352

  Fly   458 ANFNPTGSPYATNQNAINSSTASLNSTLGTTIGGANSAASLLVNGTGINLSINLGSPNPAPNLAV 522
                    .|..:..|:|..|..:                     .|:||               
Zfish   353 --------AYDNDIAAMNQQTHLI---------------------PGLNL--------------- 373

  Fly   523 ATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQ 587
                                                                             
Zfish   374 ----------------------------------------------------------------- 373

  Fly   588 QTAAAASAATASNVFGAVGQVNLEQYAAAVASAAAASRPTQSQLDAAAVQFDPFRHLGSATAPAA 652
                           ||:|                              .|.|    .||..|.|
Zfish   374 ---------------GAIG------------------------------LFPP----SSAMPPPA 389

  Fly   653 TPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEI 717
            ...|:....:|                     |...|.:::.:|.:|...:||::|..|:.:.::
Zfish   390 LGNSVPGPPYG---------------------PMGASEQETVHVYIPAQAVGALIGKKGQHIKQL 433

  Fly   718 QHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKINEE 765
            ...:||:::|:...  ||.::.|:|.:||.|.|..|||..|..|:.||
Zfish   434 SRFAGASIKIAPAE--APDSKMRMVIVTGPPEAQFKAQGRIYGKLKEE 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 18/64 (28%)
PCBP_like_KH 368..433 CDD:239089 21/70 (30%)
KH-I 696..759 CDD:238053 20/62 (32%)
igf2bp1NP_001070027.2 RRM1_IGF2BP1 1..77 CDD:241069
RRM <2..>87 CDD:223796
RRM2_IGF2BP1 81..156 CDD:241072 13/65 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 155..195 8/64 (13%)
KH-I 201..264 CDD:238053 18/64 (28%)
KH-I 282..347 CDD:238053 21/69 (30%)
KH-I 409..472 CDD:238053 20/64 (31%)
KH 489..559 CDD:197652
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 561..598
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574633
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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