DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ps and nova2

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_001296453.1 Gene:nova2 / 553201 ZFINID:ZDB-GENE-080211-1 Length:517 Species:Danio rerio


Alignment Length:515 Identity:216/515 - (41%)
Similarity:293/515 - (56%) Gaps:90/515 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 HGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAI 333
            |.|..|.:|:|:|:.|:|:||||||:||..|||:|||.:|:|||.|||||||||||||.|:.||:
Zfish    73 HEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEAL 137

  Fly   334 MVVMEFIMDKIREKPDLTNK-----IVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIK 393
            ..|.:||.:|:||.|....|     |:...:....:|.||.|::|||||||:|||||||.:|.:.
Zfish   138 NNVHDFIAEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQAKLIVPNSTAGLIIGKGGATVKAVM 202

  Fly   394 EESGSYVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTCLNVSYADVSGPVA 458
            |:||::||:||||..::||||.:||.|:.|.|:.|.::|:.||.|||||.:|||:||:::|||||
Zfish   203 EQSGAWVQLSQKPDGINLQERVVTISGEPEQNRKAVEIIVQKIQEDPQSSSCLNISYSNISGPVA 267

  Fly   459 NFNPTGSPYATNQNAINSSTASLNSTLGTTIGGANSAASLLVNGTGINLSINLGSPNPAPNLAVA 523
            |.||||||||.:...:.::.|:..:|..:.:|.|:.|      |.|                |..
Zfish   268 NSNPTGSPYANSAEVMPAAAAAAAATASSLLGQASLA------GVG----------------AFP 310

  Fly   524 TQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQ 588
            |.:          |.:|......:.:||:.||.||.        :||    :||  ||:      
Zfish   311 TTM----------SSFSGNDLLAITSALNTLASYGY--------NTN----SLG--LGL------ 345

  Fly   589 TAAAASAATASNVFGAVGQVNLEQYAAAVASAAAASRPTQSQLDAAAVQFDPFRHLGSATAPAAT 653
                 :.|.||.|..||.       |:|..:||||:....|..:.|:.         ||..||  
Zfish   346 -----NPAAASGVLAAVA-------ASANPAAAAAANLLASYANDAST---------SAGHPA-- 387

  Fly   654 PVSLNNNSFG-LTATTGTATTAQLGGLSKSPTPGDLS-------SKDSKNVEVPEVIIGAILGPS 710
             .||...:.| |.|.|| ||...|...|.......|:       :||...:.|||.::|||||..
Zfish   388 -TSLGGFTLGSLAAATG-ATNGYLSAASPLVASSLLATEKLAEGAKDVVEIAVPENLVGAILGKG 450

  Fly   711 GRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKINEEETKRA 770
            |::|||.|.::||.:||||||.|.||||||.|||||.|:|...|||||.|:|..|:..||
Zfish   451 GKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGSPAATQAAQYLISQRITYEQGVRA 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 40/64 (63%)
PCBP_like_KH 368..433 CDD:239089 36/64 (56%)
KH-I 696..759 CDD:238053 39/62 (63%)
nova2NP_001296453.1 PCBP_like_KH 79..145 CDD:239089 41/65 (63%)
PCBP_like_KH 179..242 CDD:239089 35/62 (56%)
KH-I 433..498 CDD:238053 38/64 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574630
Domainoid 1 1.000 92 1.000 Domainoid score I7605
eggNOG 1 0.900 - - E1_KOG2191
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 329 1.000 Inparanoid score I2437
OMA 1 1.010 - - QHG48040
OrthoDB 1 1.010 - - D1167935at2759
OrthoFinder 1 1.000 - - FOG0002568
OrthoInspector 1 1.000 - - otm25607
orthoMCL 1 0.900 - - OOG6_103746
Panther 1 1.100 - - O PTHR10288
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1689
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.860

Return to query results.
Submit another query.