DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ps and HnRNP-K

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster


Alignment Length:549 Identity:131/549 - (23%)
Similarity:207/549 - (37%) Gaps:118/549 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   260 ENNNNNHIHHGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVC 324
            :.|..|.    ||   ::||:|:..:||:|||||:.|..::....|.|.:..|..     .||..
  Fly    22 KRNRRNE----ET---VRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQG-----PERTI 74

  Fly   325 LITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDK--QVKILVPNSTAGMIIGKGGA 387
            .|:...|:   .:|.|.:.:               |..:|||:  .|::|:..|.||.:|||||.
  Fly    75 QISADIES---TLEIITEML---------------KYFEERDEDFDVRLLIHQSLAGCVIGKGGQ 121

  Fly   388 FIKQIKEESGS-----YVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTCLN 447
            .||:|::..|.     :..::.:.||     |.:..:|.:.....|.:.:::...:.|       
  Fly   122 KIKEIRDRIGCRFLKVFSNVAPQSTD-----RVVQTVGKQSQVIEAVREVITLTRDTP------- 174

  Fly   448 VSYADVSGPVANFNPTG---------SPYATNQNAINSSTASLNSTLGTTIGGANSAASLLVNGT 503
                 :.|.:.|::|..         ..|.|...:...|....|...|...|.|..||.  .||.
  Fly   175 -----IKGAIHNYDPMNFDRVYADEYGGYGTGSGSTRPSQRGNNRNGGGAGGVAGGAAG--GNGG 232

  Fly   504 GINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSH 568
            |.|..   |:...|.....|.:.......|:.|:|..:. .|..:...:......|.|.|   ::
  Fly   233 GFNAG---GARGNAGGRGGADRFGGAAGGAVAGAGMGQR-DNPFINPWANGGGGDVDGFG---NN 290

  Fly   569 TNGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVG-----------QVNLEQYAAAVASAAA 622
            ..||....||..|         ..|........||..|           ..|..| |....|..:
  Fly   291 AGGAGGFAGNSFG---------GGAGGPFGGGSFGNNGFGGGPSDFGGNSGNFGQ-AQGTNSLPS 345

  Fly   623 ASRPTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNN-SFGLTATTGT-----------ATTAQ 675
            ....:|:|...:::.     .|||.......|..|.|. |.|.....||           |....
  Fly   346 LGSFSQNQGGTSSLP-----SLGSFGQNPGGPGGLGNGLSGGANGGVGTLGGANGAGGFNAVGGA 405

  Fly   676 LGGLSKSP-----TPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAP 735
            .||.:.||     .|......:|..|.:|:.:.|||:|..|..:..|::.|.|.:.|.:.   .|
  Fly   406 NGGPNGSPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEP---LP 467

  Fly   736 GTRNRIVTITGQPSAIAKAQYLIEQKINE 764
            .:.:||:||:|.|..|..||||::|.::|
  Fly   468 NSNDRIITISGTPKQIQMAQYLLQQSVHE 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 19/64 (30%)
PCBP_like_KH 368..433 CDD:239089 19/69 (28%)
KH-I 696..759 CDD:238053 23/62 (37%)
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 21/71 (30%)
PCBP_like_KH 103..167 CDD:239089 19/68 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439332
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10288
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.