DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and Pcbp4

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_001178812.1 Gene:Pcbp4 / 363133 RGDID:1307910 Length:403 Species:Rattus norvegicus


Alignment Length:521 Identity:111/521 - (21%)
Similarity:175/521 - (33%) Gaps:236/521 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 SGIEVEIENNNNNHIHHGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYP 317
            :|:|.|.|.:         .|..:::|:.....|:||||.|||:..:::.:.||:.:|:.     
  Rat     6 AGLEEEPELS---------ITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG----- 56

  Fly   318 GTTERVCLITGSTEAIMVVMEFIMDKIRE-------------KPDLTNKIVDTDSKQTQERDKQV 369
            ...||:..|||||.|:...:..|..|:.|             :|.:|                 :
  Rat    57 SCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVT-----------------L 104

  Fly   370 KILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQK--PTDVSLQERCITIIGDKENNKNACKMI 432
            ::::|.|..|.:|||.|..||:|:|.:|:.||::..  |...   ||.:|:.|..:......:.|
  Rat   105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST---ERAVTVSGVPDAIILCVRQI 166

  Fly   433 LSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIGGANSAAS 497
            .:.|:|.|..|..:                   ||                              
  Rat   167 CAVILESPPKGATI-------------------PY------------------------------ 182

  Fly   498 LLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGM 562
                               .|:|::.|.||.    |.:|              .||..:||    
  Rat   183 -------------------HPSLSLGTVLLS----ANQG--------------FSVQGQYG---- 206

  Fly   563 GVGVSHTNGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVASAAAASRPT 627
                                            |.|.:.|      ..|:                
  Rat   207 --------------------------------AVTPAEV------TKLQ---------------- 217

  Fly   628 QSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSKD 692
              ||...||.|         .:|:..|        ||..:|.|:                     
  Rat   218 --QLSGHAVPF---------ASPSVVP--------GLDPSTQTS--------------------- 242

  Fly   693 SKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYL 757
            |:...||..:||.::|..|..:.||:.:|||:::|..:   |.|...|.|||||.|.:||.||||
  Rat   243 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQ---AEGAGERHVTITGSPVSIALAQYL 304

  Fly   758 I 758
            |
  Rat   305 I 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 20/64 (31%)
PCBP_like_KH 368..433 CDD:239089 19/66 (29%)
KH-I 696..759 CDD:238053 28/63 (44%)
Pcbp4NP_001178812.1 KH-I_PCBP4_rpt1 17..86 CDD:411945 23/73 (32%)
KH-I_PCBP4_rpt2 101..172 CDD:411948 22/90 (24%)
KH-I_PCBP4_rpt3 241..308 CDD:411951 30/89 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335318
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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