Protein Alignment ps and Nova2

DIOPT Version :10

• Sequence 1: NP_001262415.1
• Gene: ps / 44258
• FlyBaseID: FBgn0261552
• Length: 780
• Species: Drosophila melanogaster
• Sequence 2: NP_001414099.1
• Gene: Nova2 / 292681
• RGDID: 1308032
• Length: 492
• Species: Rattus norvegicus
• Alignment Length: 539
• Identity: 206/539 - (38%)
• Similarity: 288/539 - (53%)
• Gaps: 88/539 - (16%)

  Fly   249 ESVCSGIEVEIENNNNNHIHHGETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSH 313
            |.||:        ..:|....||  |.:|:|:|:.|:|:||||||:||..|||:|||.:|:|||.
  Rat    18 EVVCT--------KRSNTGEEGE--YFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 72

  Fly   314 DFYPGTTERVCLITGSTEAIMVVMEFIMDKIRE------KPDLTNKIVDTDSKQTQERDKQVKIL 372
            ||||||||||||:.|:.||:.....||.:|:||      ||::.| |:...:....:|.||.|::
  Rat    73 DFYPGTTERVCLVQGTAEALNAAHSFIAEKVREIPQAMTKPEVVN-ILQPQTTMNPDRAKQAKLI 136

  Fly   373 VPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIV 437
            |||||||:|||||||.:|.:.|:||::||:||||..::||||.:|:.|:.|....|...|:.|:.
  Rat   137 VPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQ 201

  Fly   438 EDPQSGTCLNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIG-------GANSA 495
            |||||.:|||:|||:|:|||||.||||||||:..:.:.::.|:..:.....:|       ||..|
  Rat   202 EDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLAGVGAFPA 266

  Fly   496 ASLLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGV- 559
            |....:||.:              ||::|                         ||:.||.||.
  Rat   267 ALPAFSGTDL--------------LAIST-------------------------ALNTLASYGYN 292

  Fly   560 ---LGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVASAA 621
               |.:|:..:..:|.       |.........||||:|...::..|..|       |...|.||
  Rat   293 TNSLSLGLNSAAASGV-------LAAVAAGANPAAAAAANLLASYTGDAG-------AGPGAGAA 343

  Fly   622 AASRPTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPG 686
            ....|....|.:.|:......:||:....||       .:.|.......|.....||...:....
  Rat   344 PPPPPPPGALGSFALAAAANGYLGAGAGGAA-------GAGGAPLVAAAAAAGAAGGFLTAEKLA 401

  Fly   687 DLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAI 751
            ..|:|:...:.|||.::|||||..|::|||.|.::||.:||||||.|.||||||.|||||.|:|.
  Rat   402 AESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAAT 466

  Fly   752 AKAQYLIEQKINEEETKRA 770
            ..|||||.|::..|:..||
  Rat   467 QAAQYLISQRVTYEQGVRA 485

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ps	NP_001262415.1	KH-I_NOVA_rpt1	274..345	CDD:411863	42/70 (60%)
		KH-I_NOVA_rpt2	367..436	CDD:411864	36/68 (53%)
		KH-I_NOVA_rpt3	694..762	CDD:411807	41/67 (61%)
Nova2	NP_001414099.1	None