DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and nova-1

DIOPT Version :10

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_001360614.1 Gene:nova-1 / 180183 WormBaseID:WBGene00013347 Length:417 Species:Caenorhabditis elegans


Alignment Length:379 Identity:127/379 - (33%)
Similarity:185/379 - (48%) Gaps:57/379 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 NNHIHHG---ETTYHM--KILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERV 323
            |...|.|   |...|:  |||:|:.|.|||||||||.:.:|:.|...||:|||:.:.||||:||:
 Worm    31 NKKAHFGGEEEGGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERI 95

  Fly   324 CLITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAF 388
            ||:.|....||.|:|.|.||||||..........|.|.| .|..::||::||::|||:|||.||.
 Worm    96 CLVKGRLNNIMAVIESIQDKIREKCADQGGSDAFDHKNT-SRGAEIKIVMPNTSAGMVIGKSGAN 159

  Fly   389 IKQIKEESGSYVQISQKPTDVSLQ---ERCITIIGDKENN-KNACKMILSKIVEDPQSGTCLN-V 448
            ||.|:|:.|..:|:..|...|..:   ||.:|:..|:.:. ..|...:|.|:..||...:.:| .
 Worm   160 IKDIREQFGCQIQVYPKAGSVEAKTSLERVVTVAHDEASALLQAASRVLEKVASDPHHASEINKE 224

  Fly   449 SYADVSGP--VANFNPTGSPYA------TNQNAINSSTASLNSTLGTTIGGANSAASLLVNGTGI 505
            .:...|||  .||..|:|....      :|.|:..||..:.|.. |...||.|..|:....|.| 
 Worm   225 DFGKGSGPSGSANSGPSGGGGGGGGGGQSNNNSSFSSVPAFNGG-GGGGGGMNVGAAGFGGGGG- 287

  Fly   506 NLSINLGSP--------------NPAPNLAVAT----QLLEHIKVAMRGSGYSETVTNEVVAALS 552
               ...|.|              |..|...:..    ..|::::..:|.||::|...:||:.|:.
 Worm   288 ---QGYGGPQFGGQGGPQFGNGNNKYPMSGLGNNELLSFLDNLQSTLRTSGFNEQSVSEVMQAMQ 349

  Fly   553 VLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVG 606
            |||||.::|:|:|              |||..:.|......|...::| .|:.|
 Worm   350 VLAKYNIMGLGLG--------------LGVAAMAQMRTGQESQGMSAN-HGSAG 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 KH-I_NOVA_rpt1 274..345 CDD:411863 38/72 (53%)
KH-I_NOVA_rpt2 367..436 CDD:411864 26/72 (36%)
KH-I_NOVA_rpt3 694..762 CDD:411807
nova-1NP_001360614.1 KH-I_NOVA_rpt1 45..117 CDD:411863 38/71 (54%)
KH-I_NOVA_rpt2 138..211 CDD:411864 26/72 (36%)
Blue background indicates that the domain is not in the aligned region.

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