DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and Igf2bp1

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_034081.1 Gene:Igf2bp1 / 140486 MGIID:1890357 Length:577 Species:Mus musculus


Alignment Length:662 Identity:120/662 - (18%)
Similarity:205/662 - (30%) Gaps:296/662 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 ISHISNISNISNIGNISNSNHSNAAYSLAVHSYQ-------KQIESPA-NPSHVPHHQMDLSPLS 171
            ::....:.|...:...|.:...|..||....:.|       .|:|:.| ..|::|..|:...|  
Mouse   101 LAQYGTVENCEQVNTESETAVVNVTYSNREQTRQAIMKLNGHQLENHALKVSYIPDEQITQGP-- 163

  Fly   172 ENGSPNGTPGAQTPTATASGNTAAALASAAAAAAAATSGGNGSSITNCNSNNSSSSSNAQQQLQL 236
            |||...|......|.                         .||.:        ::.:.|:||   
Mouse   164 ENGRRGGFGSRGQPR-------------------------QGSPV--------AAGAPAKQQ--- 192

  Fly   237 GNYKTNSCWCYGESVCSGIEVEIENNNNNHIHHGETTYHMKILVPAVASGAIIGKGGETIASLQK 301
                               .|:|.               :::|||....||||||.|.||.::.|
Mouse   193 -------------------PVDIP---------------LRLLVPTQYVGAIIGKEGATIRNITK 223

  Fly   302 DTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERD 366
            .|.:::.:.:..:  .|..|:...:..:.|......:.|::           |:..::|.|:..|
Mouse   224 QTQSKIDVHRKEN--AGAAEKAISVHSTPEGCSSACKMILE-----------IMHKEAKDTKTAD 275

  Fly   367 K-QVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSL--QERCITIIGDKENNKNA 428
            : .:|||..|:..|.:|||.|..:|::::::.:.:.||.. .|::|  .||.||:.|..||...|
Mouse   276 EVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSL-QDLTLYNPERTITVKGAIENCCRA 339

  Fly   429 CKMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIGGAN 493
            .:.|:.|:.|..::         ||                       :..||.|.|   |.|.|
Mouse   340 EQEIMKKVREAYEN---------DV-----------------------AAMSLQSHL---IPGLN 369

  Fly   494 SAASLLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYG 558
            .||                                                              
Mouse   370 LAA-------------------------------------------------------------- 372

  Fly   559 VLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVASAAAA 623
                             :|.|                                     .||::|.
Mouse   373 -----------------VGLF-------------------------------------PASSSAV 383

  Fly   624 SRPTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDL 688
            ..|..|...||     |:                  :||                 .::|     
Mouse   384 PPPPSSVTGAA-----PY------------------SSF-----------------MQAP----- 403

  Fly   689 SSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAK 753
             .::...|.:|...:|||:|..|:.:.::...:.|:::|:...  .|.::.|:|.|||.|.|..|
Mouse   404 -EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPE--TPDSKVRMVVITGPPEAQFK 465

  Fly   754 AQYLIEQKINEE 765
            ||..|..|:.||
Mouse   466 AQGRIYGKLKEE 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 17/64 (27%)
PCBP_like_KH 368..433 CDD:239089 22/66 (33%)
KH-I 696..759 CDD:238053 20/62 (32%)
Igf2bp1NP_034081.1 RRM1_IGF2BP1 1..77 CDD:241069
RRM2_IGF2BP1 81..156 CDD:241072 10/54 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 156..190 9/68 (13%)
Necessary for interaction with IGF2BP1 and binding to TAU mRNA 187..570 100/541 (18%)
KH-I 198..261 CDD:238053 17/64 (27%)
KH-I 279..344 CDD:238053 22/65 (34%)
Sufficient for nuclear export. /evidence=ECO:0000250 312..323 4/11 (36%)
KH_1 408..471 CDD:365809 20/64 (31%)
Sufficient for nuclear export. /evidence=ECO:0000250 485..495
KH-I 489..553 CDD:238053
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831583
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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