DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and Hnrnpk

DIOPT Version :10

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_001426721.1 Gene:Hnrnpk / 117282 RGDID:71058 Length:464 Species:Rattus norvegicus


Alignment Length:582 Identity:114/582 - (19%)
Similarity:209/582 - (35%) Gaps:191/582 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 NYKTNSCWCYGESVCSGIEVE--IENNNNNHIHHGETTYHMKILVPAVASGAIIGKGGETIASLQ 300
            |.:||.  .:|:.....:|.|  .:.:.|.     :....::||:.:..:||:|||||:.|.:|:
  Rat    12 NTETNG--EFGKRPAEDMEEEQAFKRSRNT-----DEMVELRILLQSKNAGAVIGKGGKNIKALR 69

  Fly   301 KDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVVMEFIMDKIRE-----KPDLTNKI-VDTDS 359
            .|..|.|.:..|     ...||:..|:...|.|..:::.|:..:.|     .|..|::: :::|:
  Rat    70 TDYNASVSVPDS-----SGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDA 129

  Fly   360 KQT--------QERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERC- 415
            .:.        .:.|.::::|:..|.||.|||..||.||:::|.:.:.:::        .||.| 
  Rat   130 VECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL--------FQECCP 186

  Fly   416 -----ITIIGDKENNKNAC-KMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYATNQNAI 474
                 :.:||.|.:....| |:||..|.|.|            :.|....::|.   :.......
  Rat   187 HSTDRVVLIGGKPDRVVECIKIILDLISESP------------IKGRAQPYDPN---FYDETYDY 236

  Fly   475 NSSTASLNSTLGTTIG---GANSAASLLVNGTG-----------INLSINLGSPNPAP------- 518
            ...|...:...|..:|   ........:..|.|           .::|...|.|.|.|       
  Rat   237 GGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGG 301

  Fly   519 ----NLAV-------ATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHTNGA 572
                ||.:       ...|:.:.:....|..|.                 |::|           
  Rat   302 SRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYD-----------------GMVG----------- 338

  Fly   573 HSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVASAAAASRPTQSQLDAAAVQ 637
                  |....|.|                                ||.....|::.|:     .
  Rat   339 ------FSADETWD--------------------------------SAIDTWSPSEWQM-----A 360

  Fly   638 FDPFRHLGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVI 702
            ::|                ...:.:..:...|..:...|||    |.       .:..|.:|:.:
  Rat   361 YEP----------------QGGSGYDYSYAGGRGSYGDLGG----PI-------ITTQVTIPKDL 398

  Fly   703 IGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKINE 764
            .|:|:|..|:.:.:|:|.|||:::|.:.   ..|:.:||:||||....|..||||::..:.:
  Rat   399 AGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 KH-I_NOVA_rpt1 274..345 CDD:411863 21/70 (30%)
KH-I_NOVA_rpt2 367..436 CDD:411864 22/75 (29%)
KH-I_NOVA_rpt3 694..762 CDD:411807 24/67 (36%)
HnrnpkNP_001426721.1 Necessary for interaction with DDX1. /evidence=ECO:0000250 1..276 65/298 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37 6/26 (23%)
2 X 22 AA approximate repeats 54..421 92/492 (19%)
5 X 4 AA repeats of G-X-G-G 59..407 83/473 (18%)
Interaction with ZIK1. /evidence=ECO:0000250 209..337 23/159 (14%)
RNA-binding RGG-box 236..273 5/36 (14%)
2 X 6 AA approximate repeats 245..329 12/83 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 250..329 11/78 (14%)

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