DRSC/TRiP Functional Genomics Resources

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Protein Alignment ps and nova1

DIOPT Version :9

Sequence 1:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster
Sequence 2:NP_001096339.1 Gene:nova1 / 100124925 XenbaseID:XB-GENE-949963 Length:508 Species:Xenopus tropicalis


Alignment Length:559 Identity:232/559 - (41%)
Similarity:298/559 - (53%) Gaps:130/559 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 IEVEIENNNNNHIHHGET-TYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPG 318
            :|...|..:....:.||. .:.:|:|:|:.|:|:||||||:||..|||:|||.:|:|||.|||||
 Frog    30 LEAPPEAGSTKRTNTGEDGQFFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG 94

  Fly   319 TTERVCLITGSTEAIMVVMEFIMDKIREKPDLTNK-----------IVDTDS-KQTQ-------- 363
            ||||||||.|:.||:..|..||.:||||.|....|           .|:.|. |||.        
 Frog    95 TTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQTLSSLPPATK 159

  Fly   364 ---------ERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITII 419
                     .|..||||:|||||||:|||||||.:|.:.|:||::||:||||..::||||.:|:.
 Frog   160 SSPSDPMTISRASQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVS 224

  Fly   420 GDKENNKNACKMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNST 484
            |:.|.|:.|.::|:.||.||||||:|||:|||:|:|||||.|||||||                 
 Frog   225 GEPEQNRKAVELIVQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY----------------- 272

  Fly   485 LGTTIGGANSAASLLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRG--------SGYSE 541
                   ||:|..|                   |..|.|..||.|..:|  |        ||::.
 Frog   273 -------ANTAEVL-------------------PTAAAAAGLLGHANLA--GVAAFPAVLSGFTG 309

  Fly   542 TVTNEVVAALSVLAKYG----VLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAAAASAATASNVF 602
            .....:.:||:.||.||    .||:|:..:...||               ..||||||..|    
 Frog   310 NDLVAITSALNTLASYGYNLNTLGLGLSQAAATGA---------------LAAAAASANPA---- 355

  Fly   603 GAVGQVNLEQYAAAVASAAAASRPTQSQLDAAAVQFDPFRHLGS-ATAPAATPVSLNNNSFGLTA 666
             |....||   .|..||.|.|...|.:   .||..|    .||| |.|.|||     |..||  |
 Frog   356 -AAAAANL---LATYASEATAGGGTAA---GAAGTF----ALGSLAAATAAT-----NGYFG--A 402

  Fly   667 TTGTATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKG 731
            .:..|.:|.||  ::..|.|   |||...:.|||.::|||||..|::|||.|.::||.:||||||
 Frog   403 ASPLAASAILG--TEKSTDG---SKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKG 462

  Fly   732 IFAPGTRNRIVTITGQPSAIAKAQYLIEQKINEEETKRA 770
            .|.||||||.|||||.|:|...|||||.|::..|:..||
 Frog   463 EFVPGTRNRKVTITGTPAATQAAQYLITQRVTYEQGVRA 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 40/64 (63%)
PCBP_like_KH 368..433 CDD:239089 37/64 (58%)
KH-I 696..759 CDD:238053 39/62 (63%)
nova1NP_001096339.1 PCBP_like_KH 51..117 CDD:239089 41/65 (63%)
PCBP_like_KH 173..238 CDD:239089 37/64 (58%)
KH-I 424..489 CDD:238053 38/64 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 89 1.000 Domainoid score I7721
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 320 1.000 Inparanoid score I2481
OMA 1 1.010 - - QHG48040
OrthoDB 1 1.010 - - D1167935at2759
OrthoFinder 1 1.000 - - FOG0002568
OrthoInspector 1 1.000 - - otm49428
Panther 1 1.100 - - LDO PTHR10288
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5279
SonicParanoid 1 1.000 - - X1689
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.200

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