DRSC/TRiP Functional Genomics Resources

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Protein Alignment bab2 and mamo

DIOPT Version :10

Sequence 1:NP_523879.2 Gene:bab2 / 44254 FlyBaseID:FBgn0025525 Length:1067 Species:Drosophila melanogaster
Sequence 2:NP_572932.2 Gene:mamo / 32353 FlyBaseID:FBgn0267033 Length:1553 Species:Drosophila melanogaster


Alignment Length:1032 Identity:247/1032 - (23%)
Similarity:356/1032 - (34%) Gaps:339/1032 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 QQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSC-EGHSIKAHKMVLSACSPYFQALFYDNPCQH 259
            :.:|||||||||||..||.:|||..|.|||||.| ||.||:|||:||||||.|||:||.::|..|
  Fly     4 EHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQSLFLEHPEGH 68

  Fly   260 PIIIMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAEVSAGRGEGGASALPMS 324
            .|:|::||.:::|:.|||||||||:||...|::.|||.||:||::||||::              
  Fly    69 LIVILKDVRFAELQTLVEFMYKGEVNVQYCQLSALLKTAESLKVKGLAEMT-------------- 119

  Fly   325 AFDDEDEEEELASATAILQQDGDADPDEEMKAKRPRLLPEGVLDLNQRQRKRSRDGSYATPSPSL 389
                 ::...|        ::.:.:||        ||.|:|                        
  Fly   120 -----NQNTTL--------REPEREPD--------RLRPQG------------------------ 139

  Fly   390 QGGESEISERGSSGTPGQSQSQPLA---------MTTSTIVRNPFASPNPQTLEGRNSAMNAVAN 445
             ||       ||.|:..::...|.|         ..|:|......|:.:..| ...::|..|.|.
  Fly   140 -GG-------GSGGSAHKAADSPAAALDATAATQAATATATATAAAATSTST-SATSAAATAAAT 195

  Fly   446 QRKSPAPTAT---GHSNGNSGAAMHSPPGGVAVQSALPPHMAAIVPPPPSAMHHHAQQLAAQHQL 507
            ...|.:.|||   |.||..:..|        |..:|                   ....||....
  Fly   196 AATSASTTATAAAGSSNTTTTTA--------ATTTA-------------------TCATAATSTA 233

  Fly   508 AHSHAMASALAAAAAGAGAAGAGGAGSGSGSGASAPTGGTGVAGSGAGAAVGS------HHDDME 566
            |.|.:.:...|||||.|.|:.:|.|.|...:.:|:.|||.....|...:...:      |..|  
  Fly   234 ATSSSSSVTSAAAAAAAAASASGVAHSEEATSSSSSTGGQKREASDRSSPTPAKRSSRMHPAD-- 296

  Fly   567 IKPEIAEMIREEERAKMIESGGHGGWMGAAAAATGAASVAADSYQYQLQSMWQKCWNTNQQNLVQ 631
             |.::|| .||:|:.:..|                  .::.:.....|:.......:...:|...
  Fly   297 -KVDVAE-DREQEQNQADE------------------LLSEELLGRNLKDEEDDDVDELDENEET 341

  Fly   632 QLRFRERG------------PLKSW-RP--EAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYA 681
            :||.|:..            ||..: ||  |..:.|..:..::|.|.|.:..            :
  Fly   342 KLRGRDEDDDDEDEEEDTPMPLDLYQRPNVEPKSAAAATAAQQGGSNSLSGS------------S 394

  Fly   682 NRVHNMLGPSLDGGADPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMSAHQYANG 746
            |..|.....:.:...:....:.....                           ....|....|:.
  Fly   395 NACHTNSSSNSNNNNNNNNNSSSNNN---------------------------NNTSSGKTSASS 432

  Fly   747 QGHGTYIGGGTTTN-------------GYHSAAAAKLAAQNAALAPPDAG------SPLSSMTET 792
            .| ||...|||..:             |:|.............:...|..      .|.::|...
  Fly   433 NG-GTASSGGTADSVVAVDDDDDDDDGGHHHQRQVMDDRLEQDVDEEDLDDDVVVVGPATAMARG 496

  Fly   793 LRRQILSQ------------QQQHQQHHQQQAHHQQQPSHHQQQSPHAQSMN----MYKSPA--- 838
            :.:::..|            |.||.|||...:.|...| ||||...|:...:    :.||..   
  Fly   497 IAQRLAHQNLQRLHHTHHHAQHQHSQHHHPHSQHHHTP-HHQQHHTHSDDEDAMPVIAKSEILDD 560

  Fly   839 -YLQRSEIED---------------------------------------------QVSAAAAVAA 857
             |....::||                                             ..|||||.||
  Fly   561 DYDDEMDLEDDDEADNSSNDLGLNMKMGSGGAGGGGGVDLSTGSTLIPSPLITLPSSSAAAAAAA 625

  Fly   858 AAAKHQQQ-----QGERRGSENLPDLSALGLMGLPGLNVMPSR---GSGGGSGGAAPNSAAS--- 911
            |||...|:     ...:.......|||..|..|.|...  .||   |:.||.|||:.:|..|   
  Fly   626 AAAMESQRSTPAMSAAQAAGAGASDLSIGGCGGRPASR--SSRDGGGNDGGRGGASSSSLLSPGT 688

  Fly   912 -------YARELSRERERDRERERERELSRQYGSQSRGSSSGSGSAKSLTASQRP---GAASPYS 966
                   .:..||.::|.|...:.....||....:|..:..|.|......||...   ..:||.|
  Fly   689 VANLLPVQSVPLSLKKEIDCSEDDNSSHSRHMQQRSASAGGGLGGDLDYRASHESLLRNFSSPMS 753

  Fly   967 AAHYAKHQASAYNKRF-LESLPAGIDL--------------------EAF-ANGLLQKSVNKSPR 1009
            |.     .||.....| ....|.|:.|                    ||. ..|||....:...|
  Fly   754 AM-----AASRCPTPFAFPFSPLGLSLFDIDPSRILSLLHHQTWLAEEALRTRGLLTAPKDFPHR 813

  Fly  1010 F--------EDFFPGPGQDMSELFANPDASAAAAAAAYAPPGAIRESPLMKIKLEQQ 1058
            |        :|:.||.||.|....|     .|..|::.:...|.|.......|..||
  Fly   814 FTTLSDLLTKDYQPGAGQPMVTATA-----TATTASSTSQVSASRSGDTQYNKHAQQ 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bab2NP_523879.2 BTB_POZ_BAB-like 222..305 CDD:349624 50/83 (60%)
HTH_psq 645..690 CDD:283007 9/46 (20%)
mamoNP_572932.2 BTB_POZ_BAB-like 30..114 CDD:349624 50/83 (60%)
C2H2 Zn finger 1082..1105 CDD:275368
C2H2 Zn finger 1116..1137 CDD:275368
C2H2 Zn finger 1149..1169 CDD:275368
zf-C2H2 1469..1491 CDD:395048
C2H2 Zn finger 1471..1491 CDD:275368
zf-H2C2_2 1483..1506 CDD:463886
C2H2 Zn finger 1499..1519 CDD:275368
zf-H2C2_2 1511..1536 CDD:463886
C2H2 Zn finger 1527..1547 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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