DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL8 and rpl-2

DIOPT Version :9

Sequence 1:NP_524726.1 Gene:RpL8 / 44251 FlyBaseID:FBgn0261602 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_507940.1 Gene:rpl-2 / 180343 WormBaseID:WBGene00004413 Length:260 Species:Caenorhabditis elegans


Alignment Length:250 Identity:190/250 - (76%)
Similarity:219/250 - (87%) Gaps:0/250 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRD 65
            |||.||.||||||.:||:|.|.||||:|||.||:|||.|||:|:|||||||||||||||::.|||
 Worm     1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRD 65

  Fly    66 PYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTS 130
            ||:||..|...:|.||||||||::||.||.:||||::|:..:||||.|||:|.|:||||.:||.|
 Worm    66 PYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARAS 130

  Fly   131 GNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNS 195
            ||||||||||.||||||::|||||||||.|.||||:|:||||||.|||:|||||:|||||.||||
 Worm   131 GNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNS 195

  Fly   196 WPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGK 250
            ||:||||||||||||||||||||||..|||:|..|||:|||||||||||||||||
 Worm   196 WPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAARRTGRIRGGK 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL8NP_524726.1 PTZ00180 1..256 CDD:173464 189/249 (76%)
rpl-2NP_507940.1 PTZ00180 1..258 CDD:173464 189/249 (76%)
Ribosomal_L2 11..88 CDD:278605 54/76 (71%)
Ribosomal_L2_C 98..224 CDD:281880 98/125 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162434
Domainoid 1 1.000 224 1.000 Domainoid score I1452
eggNOG 1 0.900 - - E1_COG0090
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H32141
Inparanoid 1 1.050 409 1.000 Inparanoid score I1057
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62185
OrthoDB 1 1.010 - - D1156335at2759
OrthoFinder 1 1.000 - - FOG0002056
OrthoInspector 1 1.000 - - oto18610
orthoMCL 1 0.900 - - OOG6_100234
Panther 1 1.100 - - LDO PTHR13691
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1126
SonicParanoid 1 1.000 - - X1357
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.840

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