DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bon and nhl-2

DIOPT Version :9

Sequence 1:NP_001262765.1 Gene:bon / 44235 FlyBaseID:FBgn0023097 Length:1207 Species:Drosophila melanogaster
Sequence 2:NP_498026.1 Gene:nhl-2 / 175654 WormBaseID:WBGene00003598 Length:1032 Species:Caenorhabditis elegans


Alignment Length:1182 Identity:228/1182 - (19%)
Similarity:387/1182 - (32%) Gaps:325/1182 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 PTDAL------PQMSTPNTA-SGAPTTSSLSSSSLSLSNPCDSAEKRSESNSSASAKFTLFKCVY 85
            ||.|:      |..||.||. ||.|:.:.......:.|:|....|...|.:.::        |.|
 Worm     8 PTSAVNGRHESPATSTNNTQNSGTPSLNGQDPLRSTSSSPLFGTEPLPEDDHAS--------CPY 64

  Fly    86 CAQLLGSNDRPKLLECLHVACAQCVSTKFS-----------------------EL------DRSL 121
            |.|   ...:|::|:|||..|..|:..:..                       ||      :|..
 Worm    65 CQQ---DFRKPRVLDCLHSMCEDCIIAQLDGHLQAKSAAIEEKKRATAAMLDCELETPKVKERPT 126

  Fly   122 PP-LIHCPVCDNASQQEFIVDNQFLIEQCTAGDSGDGVGLLGLTG-EGQKSSAAASIQCSSCSDG 184
            || :|.||:|   ||:..:.::...:.....    |.|.|..:.. |.:|..|.....|::|...
 Worm   127 PPGVIRCPIC---SQESHVGNDVRYVHAMLL----DFVRLAEMKEVEVEKMVAHHRKPCTACKSE 184

  Fly   185 AVATSWCVDCSEYICDSCVQAHQRLKITKDHTIKPKDEANNEQLAGAAGVDKLHMCQLHPQEKLS 249
            ..|.::|..||..:|::|..||..:.:.:.||:....:...   .||....:..||..|.|. :.
 Worm   185 QEAIAFCDQCSSDLCENCTTAHTVMNLFQGHTVTTFADLRQ---PGAHPELRQVMCSTHNQH-MR 245

  Fly   250 LFCETCDKLTCRDCQLSDHRDHKYKFAHEIATES-RQALSTLVSEINYKRFLLSSATKVIDDRQQ 313
            ..|..|:...|:.|...||.:||....:|:...: |:.:::.|..:..|.....:....:.|:.|
 Worm   246 YLCAACETAACKQCLEVDHLNHKIIDINELVINAIREDVTSTVDRVEKKYNNSVADMNSLPDKSQ 310

  Fly   314 LIHDKKKDLIKEITAMAVKITNTVNTRGKQLIMRLNEVCDSKLKVLVEKKETLQLLSDNTDHCID 378
            .::::.:.....:.....::.|::....::.:..|.|....:...:.|.....|:........|:
 Worm   311 QLNEQYEIAKYRVDKHYEELRNSIEEAYQKSVNDLEEARIRQESNIDEMYRKSQVNEARVHDAIN 375

  Fly   379 FMQNALEKGSDFAILSSKKSLVRHLQKLKCQRADIPNPEIPVRIQVQLNQVSDLQKVISQL-GII 442
            |.:..|.||:...::.|:|.:::....|.   ..||:....|.::........:...:.|| |.:
 Worm   376 FTRRLLTKGNGLELVVSRKKVIQQFGNLS---HAIPSHGHQVELEFYTPSKKQIDHFVHQLTGTV 437

  Fly   443 IVDGKPYPPTPSPNGTPQPQHPPRQPPSPNMAPPLRPGLPPGMPAGLSPNGPPVNFGPQNGPPLY 507
            |  |:...||....|........|..         |.|..||  .|.|.:....:...:.|.|:|
 Worm   438 I--GRVIQPTVKDVGNATAASTDRSE---------RGGSQPG--GGRSSSAANPSQQDEWGRPVY 489

  Fly   508 SN-------AAQQQFNNLSMSRSFPGDGSGKVRFGGMPPVGMQRHGQPHVSSSTHPQNMDISLRG 565
            |.       ..:::.|..:.:....||.:.   |||.||       ..|...||.|         
 Worm   490 SQNPQLGAIGGERKKNTQNGTNGTRGDSNA---FGGWPP-------SSHPPESTTP--------- 535

  Fly   566 LLNNQAAQSPNAHMAFNGPPSYPGGPQ----GAPAPAHQPMGPQMRPHFMPGQQGFSQGGGPGGG 626
                              ||  ..|||    |||.....|:..                      
 Worm   536 ------------------PP--VTGPQTMITGAPTQTAAPIVS---------------------- 558

  Fly   627 PRDANFMNSNARFQSQYQRMANHAQQAAAAAAM--------------AGAAGG--GGGQIPSPGA 675
                         |.|...:.|.|..|||||.|              |....|  .|.|.|.|.:
 Worm   559 -------------QQQLSNLPNAAAMAAAAAGMRPDLVALAANHMDLAALTNGSTNGSQTPLPES 610

  Fly   676 LQRPQMMSNPMQNVSAMQNSLGFHGSQAGFNTGPPQTSPQ--LGGGGMHSLAKWHI-PQSAQQSN 737
            : .|.|. |..|.:.|:...     :..|.:|.......|  |....:.:||...: ||....:|
 Worm   611 I-FPAMW-NARQGLPAVATP-----TTTGLSTNASAAYMQQKLAAAQLQALASHRLNPQIMSMNN 668

  Fly   738 MCSQQGPLLPFANGRQTSENFKISLKSPNTLKNSTPPSLGGGGAGHQGHGNGSSSAQL-NAAALG 801
            :           ...||.:.|    .:.|.:                  ||.|.:.|| :|||..
 Worm   669 L-----------RTNQTIQEF----LAMNAM------------------GNLSLNPQLTSAAAAA 700

  Fly   802 LGPAVSILSNVTSTNPKTPSPSTHENTKDFTEPIDKVRDDSINDLIATIAKLDSNGVQVLPEGRT 866
            |....:..|.||:|...........|.:       :|.|..::.:..|              .:.
 Worm   701 LAATAAANSAVTTTASDVGQSQNSANAQ-------RVSDLKVHSVFGT--------------SQQ 744

  Fly   867 KTTSPQVH--SSTDLSNTQEV-----NNKNEQKDDPNEDW--CAVCLDGGELMCCDKCPKVFHQN 922
            .:|..::|  |...||:|.::     ||.......|...|  .....|.|:|             
 Worm   745 GSTIRELHCPSGFCLSDTDDILIADTNNHRVVVCGPPHPWKIGRPGTDDGQL------------- 796

  Fly   923 CHIPAISSLPDESESWQCLLCVNIKELTKTEGSEKSSSGELSALELRILQRICLELYCQYEQSLN 987
            |....:.:|..|:..:..|              :|...|:..|.        ..|...::.:.||
 Worm   797 CFPRKVIALRGEAVRYVVL--------------DKGGDGKTRAQ--------IFEARGEFVKRLN 839

  Fly   988 FRE--PESPANTSYYEIVSSPMSLDVIRTRLDPSSPNHYKDIAGFVSDV-----RLIF---SNTY 1042
            ...  |..              .::|......|:......|.||||..:     |:.|   ::|.
 Worm   840 MMALVPRG--------------GIEVSAAAATPNGQLLLVDTAGFVYSIDVDAPRVTFWFDASTQ 890

  Fly  1043 LFYQEDTKTYSNAKYLENFFEEQLAKWLPQFEGTKPQGKRNTSNSPALLGVNATGSPSPIENGRK 1107
            |....|...:.|..|:.:|....:..:..:.:..:..|:  .|.:|..:|::.:           
 Worm   891 LGEASDVAMFDNLIYITDFKHHCVQVYTSEGKFIRKMGE--PSQTPYPIGIDVS----------- 942

  Fly  1108 SCGSASLGDSDG 1119
            ..|...:.|:.|
 Worm   943 KAGEVLVADTHG 954

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bonNP_001262765.1 zf-RING_5 82..130 CDD:291308 19/77 (25%)
BBOX 239..275 CDD:237988 12/35 (34%)
BBC 284..409 CDD:128778 18/124 (15%)
PHD_TIF1_like 899..943 CDD:277016 8/45 (18%)
Bromo_tif1_like 963..1072 CDD:99934 20/118 (17%)
nhl-2NP_498026.1 RING 62..>86 CDD:214546 10/26 (38%)
BBOX 173..217 CDD:197662 11/43 (26%)
BBOX 233..272 CDD:197662 12/39 (31%)
BBC 280..406 CDD:128778 18/128 (14%)
NHL_brat_like 729..1009 CDD:271329 49/302 (16%)
NHL repeat 754..788 CDD:271329 8/33 (24%)
NHL repeat 799..843 CDD:271329 9/65 (14%)
NHL repeat 846..887 CDD:271329 9/54 (17%)
NHL repeat 891..930 CDD:271329 6/40 (15%)
NHL repeat 935..974 CDD:271329 4/31 (13%)
NHL repeat 980..1006 CDD:271329
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.