DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sr-CII and Mdga2

DIOPT Version :10

Sequence 1:NP_524720.2 Gene:Sr-CII / 44219 FlyBaseID:FBgn0020377 Length:599 Species:Drosophila melanogaster
Sequence 2:NP_001180195.2 Gene:Mdga2 / 320772 MGIID:2444706 Length:956 Species:Mus musculus


Alignment Length:207 Identity:59/207 - (28%)
Similarity:94/207 - (45%) Gaps:27/207 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 HTMDHSCDFESEDQCGWSAEETIWLPWKRISAVT--DFHHPRTGPRYDHTFGNTSGGHYMRMET- 191
            |..:..|.||..:.|.::.::|....|.:.|..|  ..:.|.|||..|.:  .:..|.||.:|| 
Mouse   742 HLREFHCGFEDGNICLFTQDDTDNFDWTKQSTATRNTKYTPNTGPSADRS--GSKEGFYMYIETS 804

  Fly   192 --QIEAYGSYHFVSPVY---PRSLC--LNVACCFRFHYFMFG--AGVDRLVLSVKPASLQIDDMW 247
              ::|...: ..:|||:   |::..  .|.|.||.|.|.|:|  .||..:.|.:|..:...:.:|
Mouse   805 RPRLEGEKA-RLLSPVFSIAPKNPYGPTNSAYCFSFFYHMYGQHIGVLNVYLRLKGQTTIENPLW 868

  Fly   248 NSFRSNSSKFEITGSQGTHWLENTITIDKMHEDFQVVFTATDARSQFGDIAIDDVKLMTGSECGV 312
            :|          :|::|..|.|..:.|..: ..||::|.........||||||||.:..| ||..
Mouse   869 SS----------SGNKGQRWNEAHVNIYPI-TSFQLIFEGIRGPGIEGDIAIDDVSIAEG-ECAK 921

  Fly   313 DGYSTTTTTESA 324
            ....|..:.:.|
Mouse   922 QDLPTKNSVDGA 933

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CIINP_524720.2 PHA02927 <22..127 CDD:222943
Sushi 27..72 CDD:459664
MAM 136..311 CDD:459878 55/186 (30%)
Somatomedin_B 340..388 CDD:460034
Mdga2NP_001180195.2 IG_like 48..128 CDD:214653
Ig strand B 58..62 CDD:409394
Ig strand C 71..75 CDD:409394
Ig strand E 93..97 CDD:409394
Ig strand F 107..112 CDD:409394
Ig_3 134..219 CDD:464046
IG_like 251..328 CDD:214653
Ig strand B 260..264 CDD:409412
Ig strand C 274..278 CDD:409412
Ig strand E 293..297 CDD:409412
Ig strand F 307..312 CDD:409412
Ig 349..424 CDD:472250
Ig strand B 355..359 CDD:409353
Ig strand C 370..374 CDD:409353
Ig strand E 400..404 CDD:409353
Ig strand F 414..419 CDD:409353
Ig strand G 428..431 CDD:409353
Ig_3 441..518 CDD:464046
MAM 748..919 CDD:99706 54/185 (29%)
Blue background indicates that the domain is not in the aligned region.

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