DRSC/TRiP Functional Genomics Resources

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Protein Alignment spen and MRN1

DIOPT Version :10

Sequence 1:NP_722615.1 Gene:spen / 44205 FlyBaseID:FBgn0016977 Length:5560 Species:Drosophila melanogaster
Sequence 2:NP_015140.1 Gene:MRN1 / 855917 SGDID:S000006105 Length:612 Species:Saccharomyces cerevisiae


Alignment Length:645 Identity:118/645 - (18%)
Similarity:221/645 - (34%) Gaps:209/645 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   454 SYSSSHSSSSS------SHSSSHSHASSPVQSSGNCAMAEGRSSRTVNSVTVTSNSSNPSGTAVT 512
            ||:::::::::      |:::::::...|..||.:.||.:..||......|..|...| .|.|| 
Yeast     4 SYNNNNNNNNNNNNNNISNNNNNNNMFPPFPSSDDFAMYQQSSSSGPYQETYASGPQN-FGDAV- 66

  Fly   513 VSSAGVGGGCGSSSSSSSSSSSSGSSCLTANPVVHSEDNRPLAIRVRNLPA---RSSDTSL---K 571
                                                   .|:......||:   |..:.|.   .
Yeast    67 ---------------------------------------YPMNGNFTLLPSDFTREPNDSFFYEN 92

  Fly   572 DGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKIEVEPYQGYDVE 636
            ||:|...:...:.|..:...:|..:...  |.:..:.|...||.|:.:         .|..|:..
Yeast    93 DGIFDYQRIQQQPTQFQTKQRNDSQQQR--FSQEQNFEIDNEVVHNNN---------RYYEYERS 146

  Fly   637 DNEFRPYEAE-----LDEYHP------------------------------KSTRTLFIGNLEKD 666
            .||..|::.|     .|...|                              ..:||:::||:..:
Yeast   147 SNEVSPFDDENPNVLSDGMSPTIMATATAVTNANAPLPVNAQANNPLNFTSAPSRTVYLGNVPPN 211

  Fly   667 ITAGELRSHFEAFGEIIEIDIKKQGLNAY--------AFCQYSDIVSVVKAMRKMDGEHLGSNRI 723
            ::..||..|..: |.:.::.|..:.:.|:        |...:||  :::|.:      ::|...|
Yeast   212 LSVKELLDHVRS-GVVEDVKIIPEKMCAFVSFIDESAALLFHSD--AILKRL------NIGDRDI 267

  Fly   724 KLGFGKSMPTNC---------------------VWIDGVDEKVSESFLQSQFTRFGAVTKVSIDR 767
            |:|:||  ||..                     :.|:|.:..:||..|:.....:|.:..:.|.:
Yeast   268 KIGWGK--PTRIDPIVAARISTDGATRNVYIGRMTIEGEESHLSEEQLRVDLEEYGEIDCIKIIK 330

  Fly   768 NRQLALVLYDQVQNAQAAVKDM--RGTILRRKKLQVDFASRECQDAFYDK-QEKQQQQSSGSNP- 828
            .:.:|.:.:..:.||...|.::  |....:.|:  :.:....|  ||..| |:....|..|..| 
Yeast   331 EKGIAFIHFASILNAIKVVTNLPIRNPYYQNKR--IFYGKDRC--AFITKTQQHNAAQFLGVQPG 391

  Fly   829 -----RFSRYESSASSLQSRSRASSFSRHQNNSNDDCSPINTPGGASSGISSASNLINQ-STSIN 887
                 .||..|..:::|..:|.|:             :.|.|..|..:.:.:.:..:.. ...:.
Yeast   392 MEHMIEFSDREFISNALLQQSAAA-------------AAIATSAGGPNNLGNRTVYLGSLPKDVK 443

  Fly   888 ISNIGTNACSAMPAPSLASA----------VVSCNVNASGTVPASTSM----------PSGVSSS 932
            |..|    |:|:....|.|.          |...:..|:....|.:|:          ..|....
Yeast   444 IEEI----CNAVRGGLLQSIKLLNDRYVCFVTFIDPTAAAQFYAMSSLYGFTVQKKRCKVGWGKH 504

  Fly   933 SSSLPMSPAALAQRHRMVRNARQTVDCDFNEVGRLRFRSSEEVSGGAGNSTQFEDVRCDS 992
            |..|| :..|||..:...||.         .||.:.|         .|:|.:.|.|..:|
Yeast   505 SGPLP-NALALAVSNGASRNV---------YVGNIDF---------VGDSLRDERVFTES 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spenNP_722615.1 RRM2_SHARP 555..628 CDD:409785 14/78 (18%)
RRM3_SHARP 654..726 CDD:409786 17/79 (22%)
RRM4_SHARP 727..803 CDD:409787 17/98 (17%)
PTZ00121 <1912..2109 CDD:173412
DDRGK 1998..>2072 CDD:370664
Atrophin-1 3577..>3804 CDD:460830
petO 4587..>4709 CDD:438570
Atrophin-1 5107..>5374 CDD:460830
SPOC_SHARP 5399..5560 CDD:439206
MRN1NP_015140.1 RRM1_MRN1 200..273 CDD:240964 18/81 (22%)
RRM2_MRN1 289..372 CDD:409943 14/86 (16%)
RRM3_MRN1 430..503 CDD:240965 11/76 (14%)
RRM_SF 519..606 CDD:473069 10/45 (22%)
Blue background indicates that the domain is not in the aligned region.

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