DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spen and NRD1

DIOPT Version :9

Sequence 1:NP_722615.1 Gene:spen / 44205 FlyBaseID:FBgn0016977 Length:5560 Species:Drosophila melanogaster
Sequence 2:NP_014148.1 Gene:NRD1 / 855470 SGDID:S000005195 Length:575 Species:Saccharomyces cerevisiae


Alignment Length:541 Identity:100/541 - (18%)
Similarity:166/541 - (30%) Gaps:205/541 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly  4360 QQQQLDIQRKGMEMVTSATSSTPLPTPIPTSSVLTAAEKKARNQALTQAQEQNQVASQVGTGQDI 4424
            ||..||.:::..:::::...|.||...|...:.||:.:...:..||.|.               |
Yeast   164 QQLSLDPKQRSKQILSNLKKSPPLNLNISLPTDLTSTDPAKQQAALFQV---------------I 213

  Fly  4425 YEFHEDGGEEPKPKTISSVAPSAEDQRPRLILTINKTQPSIKNISEMEQTIQQQQQQQSEVISNT 4489
            ....:.....|...::.:|||                 |....|:|.....::::::        
Yeast   214 AALQKHFKTLPSHTSVGTVAP-----------------PQAHTITEYGSRRERERER-------- 253

  Fly  4490 DPIGGDNSESCNTRKSRRLQEKEDRSTVDDIIEDVVRNTNTPTGTGPHLPKGAQTPPRRSGRNAQ 4554
                    |..|:|::|                                   :::||....:.:.
Yeast   254 --------ERYNSRRNR-----------------------------------SRSPPAPFSQPST 275

  Fly  4555 AKK---TDAVQIINAVGRPRRSKDRKTIGEQTANLI-EEVTASN------ATVAASHLAPPEGAG 4609
            .:|   ....|...::|.|     ..|.|....:|. :|:..||      ..|:.....||:...
Yeast   276 GRKDRYPSVAQDQYSIGAP-----NTTFGTNNHHLYPDELNVSNNPHYRPKPVSYDSTLPPDHIK 335

  Fly  4610 VESH------VPQLDAKEVEPVSVVTPISTPAPVSVAAPVTVPVPAMVPVKPTMPQHPKKKAIAA 4668
            |.|.      || |:.||.:..:|:.|.:....|               :.....:|...|..:.
Yeast   336 VYSRTLFIGGVP-LNMKEWDLANVLKPFAEVQSV---------------ILNNSRKHAFVKVYSR 384

  Fly  4669 AEIES-YQAINSSIPSGGLPM-----------------HQTAAPATQKITGGVADAVSKALVDP- 4714
            .|.|: .|..|.   .|.||:                 |..:.....::|    ||..|..|.. 
Yeast   385 HEAENVLQNFNK---DGALPLRTRWGVGFGPRDCCDYQHGYSIIPMHRLT----DADKKWSVSAQ 442

  Fly  4715 ---------VTGV-----------------ITAGMP---------QGKEGNLPAATAAAPANSSN 4744
                     |||:                 |:..||         .||.....:.::.:|....|
Yeast   443 WGGTSGQPLVTGIVFEEPDIIVGEGVSSKAISQKMPTDSGRNGPRSGKPNKSGSISSISPVPYGN 507

  Fly  4745 EDGQAAPPPQ--LQHQQQQQH---PQQPPQQQANLQINTTLIPSGLPNPITALGKSVQLETSAAA 4804
            .. .|:||||  :|...||.:   |.||             :||  ..|..|.....|.:....|
Yeast   508 AP-LASPPPQQYVQPMMQQPYGYAPNQP-------------LPS--QGPAAAAPPVPQQQFDPTA 556

  Fly  4805 LLNKPVSVLVKGNASQVIQQQ 4825
            .||..:::|   |..|..|||
Yeast   557 QLNSLMNML---NQQQQQQQQ 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spenNP_722615.1 RRM2_SHARP 555..628 CDD:240795
RRM3_SHARP 654..726 CDD:240796
RRM4_SHARP 727..803 CDD:240797
RILP-like 1997..>2055 CDD:304877
SPOC 5404..5527 CDD:285043
NRD1NP_014148.1 CID_Nrd1_like 8..149 CDD:340781
RRM_NRD1_SEB1_like 336..412 CDD:409768 19/94 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23189
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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