DRSC/TRiP Functional Genomics Resources

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Protein Alignment spen and rbm15

DIOPT Version :9

Sequence 1:NP_722615.1 Gene:spen / 44205 FlyBaseID:FBgn0016977 Length:5560 Species:Drosophila melanogaster
Sequence 2:XP_001335820.1 Gene:rbm15 / 798517 ZFINID:ZDB-GENE-041008-192 Length:853 Species:Danio rerio


Alignment Length:1000 Identity:225/1000 - (22%)
Similarity:347/1000 - (34%) Gaps:287/1000 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   424 GVPTHPIRTRHN-LHGRSTTSSSRSHSRSPSSYSSSHSSSSSSHSSSHSHASSPVQSSGNCAMAE 487
            |....|::.|.. |........|...|:.....|:|...|::.:|||.|...|..:.    .:.:
Zfish     3 GKERSPVKKRSRALDDIRDRGGSHPTSKKMGVISNSGGGSNNGNSSSKSDGGSARRG----LLGD 63

  Fly   488 GRSSRTVNSVTVTSNSSNPSGTAVTVSSAGVGGGCGSSSSSSSSSSSSGSSCLTANPVVHSEDNR 552
            .|..|..:. .|:|.:.|..|....|:|:. |....||.|..::.::|........|...||.. 
Zfish    64 KRDGREFDG-HVSSRTGNNHGYTSPVASSS-GKNHASSLSLEAARTNSRGEARAPLPTNESEYK- 125

  Fly   553 PLAIRVRNLPARSSDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHD 617
              .:::..|.::.||..::||||||:||.|.|: ||:...|.||.|.|.|::|||...|      
Zfish   126 --TLKISELGSQLSDEEIEDGLFHEFKKFGDVS-VKISRVNDERIAFVNFRRPDDARAA------ 181

  Fly   618 KHFFG--------CKIE--------------------------------VEP----YQGYDVE-- 636
            ||..|        .|||                                :.|    |:.|.::  
Zfish   182 KHARGRLVLYDRPLKIEAVYLNRRRSRSPVKEDHFSVVAGHRHLHTQRPLSPTGLGYRDYRLQQL 246

  Fly   637 -------------------DNEFRPYEA---------------ELDEYHP----KSTRTLFIGNL 663
                               :.||..|||               |.|...|    ::.||||:|||
Zfish   247 ALGRLPPPPPPPLPRELEREREFAFYEARARPAYIAERAAPFREEDFISPEDDQRANRTLFLGNL 311

  Fly   664 EKDITAGELRSHFEAFGEIIEIDIKK--QGLNA-YAFCQYSDIVSVVKAMRKMDGEHLGSNRIKL 725
            :..:|..:||..||.||.|.|:|||:  :|.:: |.|.::.::....:|...|.|:.:|.|.||:
Zfish   312 DITVTENDLRRAFERFGTITEVDIKRPTRGQSSTYGFLKFENLDMAHRAKISMSGKVVGRNPIKI 376

  Fly   726 GFGKSMPTNCVWIDGVDEKVSESFLQSQFTRFGAVTKVSIDRNRQLALVLYDQVQNAQAAVKDMR 790
            |:||:.||..:|:.|:...|..:.|..:|.|||.:..:...:....|.:.|:.:..||||...||
Zfish   377 GYGKATPTTRLWVGGLGPWVPLTALAREFDRFGTIRTIDYRKGDTWAYIQYESLDAAQAACTHMR 441

  Fly   791 GTIL--RRKKLQVDFASRECQDAFYDKQEKQQQQSSGSNPRFSRYESSASSLQSRSRASSFSRHQ 853
            |..|  ..::|:||||         |.:.:.|||.....| ...||..|.|...|:...:....:
Zfish   442 GFPLGGPDRRLRVDFA---------DTEHRYQQQFLQPLP-LQHYEIMAESFVHRATPEAIRVRE 496

  Fly   854 NNSNDDCSPINTPGGASSGISSASNLINQSTSINISNIGTNACSAMPAPSLASAVVSCNVNASGT 918
                      .||                 ..::.......|.:..|||::...|         .
Zfish   497 ----------RTP-----------------PPLHFRERELYAGAEWPAPTIRERV---------R 525

  Fly   919 VPASTSMP-------SGVSSSSSSLPMSPAALAQRHRMVRNARQTVDC--DFNEVGRLRFRSSEE 974
            .||...:.       ....|....||...|  |::.|::.:.|. ::|  |.:.....|.|....
Zfish   526 TPAFEPLEHLERERRREAWSLERELPGREA--ARKRRLMEDGRH-LECSPDSSSEWAARRRRPPS 587

  Fly   975 VSGGAGNST---QFED----VRCDSPVTARQGSAVNCFTGPTAAVGESIDGTLNNNQITGGAEGF 1032
            :.|..|.|:   :|.|    .|.|....||:..:             |:|......:|       
Zfish   588 LEGSPGGSSRDGRFSDSERPARADRVSPARESRS-------------SLDRVPGEKRI------- 632

  Fly  1033 TGSGGSILSRRRCGKTPKDLHPVHNQRIQLAEQVEECPSSGDEGVVSPRKRIKMDYHHHHHHSNA 1097
              ...|.||....|.:|                .|....:||    |.:...|.|.......||.
Zfish   633 --KSNSNLSESSIGASP----------------AERKRKAGD----SAKGASKRDRSESSSKSNQ 675

  Fly  1098 SGVESTGEHSSINKPSPLLLSNCDVIHDPLNRKSEIRRVSETPSGSPSIKFPG--HLPSAPQSLM 1160
            :..:..|...|:.....|||.|.:                          ||.  ||.....|:.
Zfish   676 ASKQDAGGKLSMAWNGMLLLKNSN--------------------------FPASMHLLEGDLSVA 714

  Fly  1161 LSCRRPSIDVGALSALSSSSAFRHGIVGASSMDQQHMMNASAAAKRRRV--------TTTMQQPS 1217
            .|........|.:|.|..:...|        :||..:...|     ||:        ...:..|.
Zfish   715 TSLLIDGSTGGKVSQLRITQRLR--------LDQPKIDEVS-----RRIKVAGPGGYAVLLAVPG 766

  Fly  1218 SSSTTNSSSGSGLGGISSLTPADEYHHHVSRGRGHQLHSHHSHEASG------GESADGSRPGT- 1275
            ||..|:||..:.    |:..|......::.:           .:|:|      |.|.|....|. 
Zfish   767 SSEETSSSDPAA----STQRPLRNLVSYLKQ-----------KQAAGVISLPVGGSRDKDNTGVL 816

  Fly  1276 ---PLCDERPEVLPTEPRRLPPPRE 1297
               |.||...:.|.:..:.|....|
Zfish   817 HAFPPCDFSQQFLDSSAKALAKTEE 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spenNP_722615.1 RRM2_SHARP 555..628 CDD:240795 31/112 (28%)
RRM3_SHARP 654..726 CDD:240796 29/74 (39%)
RRM4_SHARP 727..803 CDD:240797 24/77 (31%)
RILP-like 1997..>2055 CDD:304877
SPOC 5404..5527 CDD:285043
rbm15XP_001335820.1 RRM1_RBM15 124..201 CDD:240997 31/86 (36%)
RRM2_RBM15 297..383 CDD:240999 32/85 (38%)
RRM3_RBM15 386..458 CDD:241001 23/80 (29%)
Herpes_ICP4_C 495..>685 CDD:332854 46/270 (17%)
SPOC 684..850 CDD:311609 39/211 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D367857at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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