DRSC/TRiP Functional Genomics Resources

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Protein Alignment spen and Sfpq

DIOPT Version :9

Sequence 1:NP_722615.1 Gene:spen / 44205 FlyBaseID:FBgn0016977 Length:5560 Species:Drosophila melanogaster
Sequence 2:XP_036020322.1 Gene:Sfpq / 71514 MGIID:1918764 Length:788 Species:Mus musculus


Alignment Length:739 Identity:150/739 - (20%)
Similarity:232/739 - (31%) Gaps:267/739 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1586 NVSRHPGGPCSGNTSPAL-------------PNLAATKATPIIGNCSGGLGNSTGSKSAGLLQRL 1637
            |.:|.|.||..|...|.|             |.....:..|                        
Mouse   130 NQNRGPMGPGPGGPKPPLPPPPPHQQQQQPPPQQPPPQQPP------------------------ 170

  Fly  1638 SSLSPMNSPQASMSPYNSPSPSPSVGGVTACLGQLTKPAAP-GTASA-GLSGGTAASSSSPAANS 1700
                |...|.....|:..|.|.|          |.:||..| |..|| |:|.....:.|:|.||.
Mouse   171 ----PHQQPPPHQPPHQQPPPPP----------QESKPVVPQGPGSAPGVSSAPPPAVSAPPANP 221

  Fly  1701 GPTKGLQYPFPSHPPLPNTAAPPPAVQPAPPPLPEMGKQSRLTGQSSGNNLTKSLSVPDGPQSSP 1765
             ||.|.. |.|...|.|..|.|..|..|.||..|..| .|....|:.|.....:.....||:..|
Mouse   222 -PTTGAP-PGPGPTPTPPPAVPSTAPGPPPPSTPSSG-VSTTPPQTGGPPPPPAGGAGPGPKPGP 283

  Fly  1766 ARVQLQKSASVP------GSTNVGAPSSLSLDSTTASVE-------------------------- 1798
            .... .|...:|      |...:|||............|                          
Mouse   284 GPGG-PKGGKMPGGPKPGGGPGMGAPGGHPKPPHRGGGEPRGGRQHHAPYHQQHHQGPPPGGPGP 347

  Fly  1799 -TSASISSSTS-NGNSSLTSAAIHVQKPQQSTF---------------VEEEH------------ 1834
             |...||.|.. ..|.||      :::|.:.|:               .|:|.            
Mouse   348 RTEEKISDSEGFKANLSL------LRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGE 406

  Fly  1835 ---TKKSGTSTSQSSSSSSKKIS------------------STHDKLHSKHN-NRSESDKKIKKS 1877
               .|..|....:..|.:..:|:                  :||....|..| :...|::.::::
Mouse   407 VFINKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEA 471

  Fly  1878 ---------------DKNASSSDKRKNSSTSQSSKSA-------------TPR---IE--DDSSE 1909
                           |:..|:.......::..:::.|             |||   :|  :...:
Mouse   472 FSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDD 536

  Fly  1910 ADDTADK-AEKNQRHEKEKK-------------------ERQEKREKDLRKQVEREEKDRKAQQE 1954
            .|...:| |:||..::||::                   :..::.||..|:|||:..||.|    
Mouse   537 EDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAK---- 597

  Fly  1955 EREKEDRKAKEEEKEREREKKAQEDREKKEREERELREKEQRDKEQKEKEIREKDLREKEQRERD 2019
                  .|.:.|.::...|.:|...|:...|.:.|||..|:...::.:|. :|..||::|:|.| 
Mouse   598 ------DKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHSQEMQKR-KEMQLRQEEERRR- 654

  Fly  2020 NREKELRDKDLREKEMREKEQREKELHREK----DQREREHREKEQSRRAMDVEQEGRGGRMREL 2080
             ||:|:.   :|::||.|:.:|::|....:    |.|||:.|             .|.||.|...
Mouse   655 -REEEMM---IRQREMEEQMRRQREESYSRMGYMDPRERDMR-------------MGGGGTMNMG 702

  Fly  2081 SSYQK--SKMDIAGEASSLTAIDCQHNKENAMDTIAQGTPGASPSTPSDNTPKERSRKLSRNSPV 2143
            ..|..  .|....|....:.               .:..||..|:|.|.:         ...|.:
Mouse   703 DPYGSGGQKFPPLGGGGGIG---------------YEANPGVPPATMSGS---------MMGSDM 743

  Fly  2144 RLHKRRLSSQESNHSAGGGGSCGG 2167
            |..:         ...||.|..||
Mouse   744 RTER---------FGQGGAGPVGG 758

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spenNP_722615.1 RRM2_SHARP 555..628 CDD:240795
RRM3_SHARP 654..726 CDD:240796
RRM4_SHARP 727..803 CDD:240797
RILP-like 1997..>2055 CDD:304877 19/61 (31%)
SPOC 5404..5527 CDD:285043
SfpqXP_036020322.1 RRM1_PSF 377..447 CDD:410000 6/69 (9%)
RRM2_PSF 453..532 CDD:410003 10/78 (13%)
NOPS_PSF 523..619 CDD:240583 24/105 (23%)
PRK12704 567..>675 CDD:237177 34/123 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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