DRSC/TRiP Functional Genomics Resources

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Protein Alignment spen and nonA-l

DIOPT Version :9

Sequence 1:NP_722615.1 Gene:spen / 44205 FlyBaseID:FBgn0016977 Length:5560 Species:Drosophila melanogaster
Sequence 2:NP_001262646.1 Gene:nonA-l / 42026 FlyBaseID:FBgn0015520 Length:630 Species:Drosophila melanogaster


Alignment Length:826 Identity:142/826 - (17%)
Similarity:220/826 - (26%) Gaps:396/826 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 TSRLVTQYQANNSTSLANSNSSPSSVSASASVFATAAGGSSERSRNRDRPYRNGSASVQGGGINS 143
            :|.|..:.|..|||:......:|..::|::.      |..:|:..      |.|..:..|||:  
  Fly    12 SSPLPQRQQRGNSTNKNLGKPTPPKLNAASD------GNPAEKKA------RLGGNTQNGGGV-- 62

  Fly   144 SNTTTTTAACTAGGSGSGAIGTGTGGLVGSGPGGVPQALGDRSSTQNIHQNHQSARVAPPQSWYE 208
                       |||.     |||.||..|...||| :...:|:...|.::|.|..:||.      
  Fly    63 -----------AGGG-----GTGGGGGGGGATGGV-EFSRNRNRGGNQNENRQGFQVAN------ 104

  Fly   209 AATAATTAQLKSSGGSGNAGASAAVGFTMSSSPINHHPHQHPHLQNPQHPHYTSSPVVGAGSCPS 273
                                              |.|..|           ...||...||:.| 
  Fly   105 ----------------------------------NSHQKQ-----------INESPKPAAGNVP- 123

  Fly   274 AAQGQPQIQSQSQTTAVHRSVAYAGSAADDLLNTATSRNMLLHSSKLNKLLKGAGATGSGGERSG 338
                           |.:..::..|.          .:|...||:      ||.|..|..||: |
  Fly   124 ---------------AKNNELSAGGG----------GQNQPNHSN------KGQGNQGDQGEQ-G 156

  Fly   339 SESP---GRAGGAT-PLTTTSTITNNSFSSNSLNNTITTATPTMPTIASGAAGSVGLGSGAEAGV 399
            ::.|   ||.||.. |....:...:|.:..|..:|             .|..|..|.|.|     
  Fly   157 NQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDN-------------KGGQGQRGAGGG----- 203

  Fly   400 CSNSGTASGDILNVAAVLAAAVDNGVPTHPIRTRHNLHGRSTTSSSRSHSRSPSSYSSSHSSSSS 464
                                                           .|.|              
  Fly   204 -----------------------------------------------KHQR-------------- 207

  Fly   465 SHSSSHSHASSPVQSSGNCAMAEGRSSRTVNSVTVTSNSSNPSGTAVTVSSAGVGGGCGSSSSSS 529
                            ||      ||.|           |..||    :.::.:|||        
  Fly   208 ----------------GN------RSRR-----------SGGSG----IMNSSMGGG-------- 227

  Fly   530 SSSSSSGSSCLTANPVVHSEDNRPLAIRVRNLPARSSDTSLKDGLFHEYKKHGKVTWVKVVGQNS 594
                                                                         ||..
  Fly   228 -------------------------------------------------------------GQRG 231

  Fly   595 ERYALVCFKKPDDVEKALEVSHDKHFFGCKIEVEPYQGYDVEDNEFRPYEAELDEYHPKSTRTLF 659
            |.:.:        .::.|::|...|                   |..|.|...|.......| |:
  Fly   232 EDFFI--------AQRLLDISGPTH-------------------ELPPIELPTDNKFVGRNR-LY 268

  Fly   660 IGNLEKDITAGELRSHFEAFGEIIEIDIKKQGLNAYAFCQYSDIVSVVKAMRKMDGEHLGSNRIK 724
            :|||..|.|..:||..|:.:|||  .||.......:.|.:.....:..||.|.:||.......::
  Fly   269 VGNLTSDTTDDDLREMFKPYGEI--GDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLR 331

  Fly   725 LGFGKSMPTNCVWIDGVDEKVSESFLQSQFTRFGAVTKVSI---DRNRQL--ALVLYDQVQNAQA 784
            :.|.   |...|.:..:::.||...|...|..||.:.:..|   ||.:..  .:|.:.:..:|.|
  Fly   332 VRFA---PNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASA 393

  Fly   785 AVK-------------------------DMRG---TILRRKKLQV------------------DF 803
            .::                         |..|   ..|.:|.|:.                  ::
  Fly   394 CLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEY 458

  Fly   804 ASR--ECQDAFYDKQE------KQQQQSSGSNPRFSRYESSASSLQ 841
            .||  :..|.|..||:      |.::....:...::|||.....|:
  Fly   459 GSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLR 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spenNP_722615.1 RRM2_SHARP 555..628 CDD:240795 6/72 (8%)
RRM3_SHARP 654..726 CDD:240796 21/71 (30%)
RRM4_SHARP 727..803 CDD:240797 20/126 (16%)
RILP-like 1997..>2055 CDD:304877
SPOC 5404..5527 CDD:285043
nonA-lNP_001262646.1 RRM1_p54nrb_like 264..334 CDD:240778 21/72 (29%)
RRM2_p54nrb_like 339..418 CDD:240779 13/78 (17%)
NOPS_NONA_like 409..508 CDD:240580 16/96 (17%)
OmpH <479..578 CDD:281871 5/26 (19%)
DUF4472 479..559 CDD:291409 5/26 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45459922
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23189
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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