DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spen and CG4266

DIOPT Version :9

Sequence 1:NP_722615.1 Gene:spen / 44205 FlyBaseID:FBgn0016977 Length:5560 Species:Drosophila melanogaster
Sequence 2:NP_001097394.1 Gene:CG4266 / 37411 FlyBaseID:FBgn0034598 Length:1306 Species:Drosophila melanogaster


Alignment Length:1424 Identity:240/1424 - (16%)
Similarity:406/1424 - (28%) Gaps:511/1424 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1715 PLPNTAAPPPAVQPAPPPLPEMGKQSRLTGQSSGNNLTKSLSVPDGPQSSPARVQLQKSASVPGS 1779
            |:.:.|.|...:....||:...|      ||..|        |..||.||.| :.|...:|.|..
  Fly   130 PIFDLADPNHPIYHQMPPVGGSG------GQGGG--------VGPGPSSSGA-LSLADISSGPNG 179

  Fly  1780 TNVGAPSSLSLDSTTASVETSASISSSTSNGNSSLTSA----AIHVQKPQQSTFVEEEHTKKSGT 1840
            .|                .:...||.::|.|:..:..|    ::..:|....:...:.|..:...
  Fly   180 LN----------------SSGMEISMNSSGGDDKMGGAMPDLSLGHEKFGGGSSSSKRHYSEQHY 228

  Fly  1841 STSQSSSSSSKKISSTH----DKLHSKHN----------NRSESDKKIKKSDKNASSSDKRKNSS 1891
            |..||..|.|.|.|.:|    :.:.|.|:          ...|..:.:...|.:....|....||
  Fly   229 SKRQSVVSCSSKTSKSHHHKREYVKSSHDIDYQVREIIEEEDEGLQMLMADDHHCMGDDSPPTSS 293

  Fly  1892 ----------------------TSQSSKSATPRIEDDSSEADDTADKAEKNQRHEKEKKERQEKR 1934
                                  |.|:.::..|:               |:||:|..:.:..|:..
  Fly   294 NLLDEKKIKQLLNNPNVLRQLHTLQNFQNLKPQ---------------EENQKHRYQDEALQQHF 343

  Fly  1935 EK----------------------DLRKQVEREEKDRKAQQEEREKEDRKAKEEEKER-EREKKA 1976
            :.                      ||.|.||...:.:..:....:..|.::...:::| :|.::.
  Fly   344 QNVMKGNAGMPPGMGMGMNMNDSMDLNKDVEFISEQQTIEVINLDGGDSRSPTPDRDRYKRSRRN 408

  Fly  1977 QEDREKKER---------EERELREKEQRDKEQKEKEIREKDLREKEQRERDNREKELRDKDLRE 2032
            ...|.:..|         .:|..|....|.:.:..:..|.:..|::::.:|.||:||        
  Fly   409 SRSRTRSPRGRGAGGGTGNDRRRRGTRSRSRSRSPRSSRRRGSRDRDRMDRSNRDKE-------- 465

  Fly  2033 KEMREKEQREKELHREKDQREREHREKEQSRRAMDVEQEGRG--------GRMRELSSYQKSKMD 2089
                               |:|||..:.:.:...|:::|...        |.:.:| .||:...|
  Fly   466 -------------------RDREHERERRKKGLPDIKKEHLSVCSTTLWVGHLSKL-VYQEELSD 510

  Fly  2090 IAGEASSLTAID------C-------QHNKENAMDTIAQGTPGASPSTPSDNTPKERSRKLSRN- 2140
            ..||...:.:||      |       :.:...||..:..........|.|....|....|..:: 
  Fly   511 TFGEYGDIVSIDQIVPRGCAFIVMNRRQDAHKAMQALKNHKLQGRAITISWAAGKGVKSKEWKDY 575

  Fly  2141 -----SPVRLHKRRLSSQESNHSAGGGGSCGGSSHQIHHEDYVKRIRMENSQNISVHSSNQRLND 2200
                 ....:...:|||.....:...||        :..||.:. |:|:           |::|.
  Fly   576 WDLELGVTYIPWSKLSSDTDFDALEEGG--------MFDEDTMP-IQMK-----------QKINQ 620

  Fly  2201 RRD-SKEHKSSSFKEDKNSSS------------------------HISRPHGCGGSSASSSKHHH 2240
            .:: :||||.:|..|...:.|                        .:..|.|.|.........  
  Fly   621 AKNAAKEHKGASIAEAAGAPSVGVPPPNLIFGIDTTQPPPVGPVGPVGPPPGPGAPPPGLMGM-- 683

  Fly  2241 RRDKHHQKGSASSIETNSSIEVVVDPIS------------------------------------- 2268
               ...|...|..:..|....:::.|.:                                     
  Fly   684 ---VRGQFPMAPPMGINMPPPIMMPPTNMPPPMMMPTTNMPPPMMMPPTMMPPGFPGIGGPPHPM 745

  Fly  2269 ----------------------QTKHNLNTSEE------ELQSHQPKREKEREHFS-SHANSSSS 2304
                                  |..::.|.|::      :|:...|...:::.:|: |.:|...|
  Fly   746 ALPPGAPFPPPGAVPPPIPSGGQISNSGNVSDDQMDIEMDLEDAPPLPPQQQANFNPSPSNVDLS 810

  Fly  2305 RHKSKRDHHHHREKKRHSVAESTNTDEEHTPQQHNPHRR---ISAA-------GSGSAGELS--- 2356
            ......:....|:::|    :..|.|....|.......|   :.||       |.|..|..|   
  Fly   811 PAAMANEMFQQRDRER----DRDNRDRSRGPGNSRWGGRDDVVEAAERWRAENGGGGGGPGSGLG 871

  Fly  2357 -SAATNTSSGKLH-----HQHHRRSVERKSSRG--------SDEGHHSSSKSLRAKLMMLSSADS 2407
             :||.|.:..:|:     |...|.......:||        ...|:|:            .....
  Fly   872 PNAAFNEARARLNLNPIEHGMPRPDFMDFDNRGGPGGPRGMGPRGNHN------------GGGPG 924

  Fly  2408 DDTDDASKKHSIFDIPDDCPNVSMYDKVKARSCKNMQRQAEEKKIKAKFSQLKQSRAKKKRSTSY 2472
            .|....:..|:.|:.|...                ||.:...   .|.|:|       :....:.
  Fly   925 GDFFPPNMNHNRFNQPTSL----------------MQMRIPP---PASFNQ-------RMGGPAG 963

  Fly  2473 DGDSDT--EFEDRQHRNSGSSSFHGRYPGLSSSDDDDDEETHQ-------RRISSDSDAEHGGQD 2528
            :|.:..  .|...|....|.:...|..||.:.:.........|       |...:|:....|||.
  Fly   964 NGGNGVGPMFMRNQGGGPGGAGPSGGGPGGAGTGGGGPGGRQQGPGFFNPRNPFNDNQRGRGGQS 1028

  Fly  2529 NQGASTL------ADANRVRQMQQNLRRLCDGDDSSEDEIRRNVMKHSHFGKRNSNSTRIASDSE 2587
            ..|...:      ....|.|.          .||  |||...|..:....|....|..|.....|
  Fly  1029 GGGVRGVGGGGGGGPGGRGRW----------SDD--EDEGGNNFKRRGGPGGPGGNRFRGERGGE 1081

  Fly  2588 SQSQPAPDLTIKQEHPIAPAQEIKREQLSDEEQKFKSRHDSNSSIEERKLKTEREIKTELG---- 2648
                                       :.|:.:...||.......|:|:       :...|    
  Fly  1082 ---------------------------MMDDRRGNNSRGGRGGPREDRE-------RPGFGNRRG 1112

  Fly  2649 --DFYNSSEYTYTGKLKEYSPETRKKHKKSKRRLKSSSTADTSAAQTPLVMTPLTPSIFDVHSSS 2711
              |..|....:.|.:..:.:.||..|.|..:..|.|::|...:||                    
  Fly  1113 SRDDSNRHSISSTDEGNKAASETEPKPKNVETELGSTNTGAPAAA-------------------- 1157

  Fly  2712 ECKTKFDNFDDLKTECSSIPLEISA---GERRKHKERKEKKREKLRNMTEATVPNSPTTNDTSSE 2773
               |:.|..:|...|.......:.|   |||.                       |.:.|....|
  Fly  1158 ---TRVDTEEDWDQELQDYEARMEAQKPGERA-----------------------SQSANSPPQE 1196

  Fly  2774 KLSKEERHRLKKS--------KKSKSMDNSCNTKIYNSSGAHPSTSPSLPATPTSAPSTAQTSKR 2830
            ||..|..:..|.:        .||::..::..|.:|:.     ...|::|.|||..|...|.|  
  Fly  1197 KLPAENENFAKPADVTGDPLVAKSQTETSAACTPLYDE-----LPPPAVPQTPTQPPKEPQGS-- 1254

  Fly  2831 GEDKMEFIFGIISDEEESQFPEQAETNKDIIPSSVSTTGPIVSAALQT---YKQEPSTP 2886
                           .....|...||  :..|...|...|  .|.|||   ..:||..|
  Fly  1255 ---------------PPRPAPPVIET--EAAPHEESVPAP--PAELQTEAPSAEEPIAP 1294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spenNP_722615.1 RRM2_SHARP 555..628 CDD:240795
RRM3_SHARP 654..726 CDD:240796
RRM4_SHARP 727..803 CDD:240797
RILP-like 1997..>2055 CDD:304877 8/57 (14%)
SPOC 5404..5527 CDD:285043
CG4266NP_001097394.1 CID 7..125 CDD:239621
RRM <488..>593 CDD:223796 18/105 (17%)
RRM_SCAF4_SCAF8 490..566 CDD:240673 14/76 (18%)
DUF2413 1147..>1254 CDD:287302 30/157 (19%)
Herpes_DNAp_acc <1206..1304 CDD:282746 26/115 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23189
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.