DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spen and nonA

DIOPT Version :9

Sequence 1:NP_722615.1 Gene:spen / 44205 FlyBaseID:FBgn0016977 Length:5560 Species:Drosophila melanogaster
Sequence 2:NP_727962.1 Gene:nonA / 32603 FlyBaseID:FBgn0004227 Length:742 Species:Drosophila melanogaster


Alignment Length:817 Identity:159/817 - (19%)
Similarity:271/817 - (33%) Gaps:229/817 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1397 QNQQNNHQQQSQQL--HGSSSSNTCLMASPAR-------PRSLSSNSSDSDVPGQNAG----GSP 1448
            |.||..:||.::.|  |.:...|......||.       |.:.:.|.:.:...|...|    |.|
  Fly    17 QRQQRGNQQANKNLGKHNAQKQNDSADGGPAEKKQRFGGPNAQNQNQNQNQNGGVTGGGGAVGGP 81

  Fly  1449 SLDERLRNFEENYERWSGGSSREHISGHTPSSATPSWQLSMHMNLSTGLNSHQTSSASGNSNSSS 1513
            :.:   :||..|...:.|..:|.:......:...|.      .|......:::||.|.|.:..:.
  Fly    82 NQN---KNFGNNKGGFVGNRNRNNNRAGNQNRTFPG------NNNPNQKPNNETSKADGPNALAK 137

  Fly  1514 GTVSSSASNSRHKFLDIDELQPSDIVKSVLAKKSVFDDDFQRLNKNQWYDPSSSDFALGSSSNIV 1578
            ....::|:..:::                 |.::......||..:||             :.|.|
  Fly   138 NNEPATAAAGQNQ-----------------ANQNANKGQNQRQGQNQ-------------NQNQV 172

  Fly  1579 TGSSLVANVSRHPGGPCSGNTSPALPNLAATKATPIIGNCSGGLGNSTGSKSAGLLQRLSSLSPM 1643
            .|..       :.|||  ||...|             || .||.||..|:.:.|..|.....:..
  Fly   173 HGQG-------NQGGP--GNQGGA-------------GN-QGGQGNQGGAGNQGNGQGFRGRNAG 214

  Fly  1644 NSPQASMS--PYN---------SPSPSPSVGGVTACLGQLTKPAAPGTASAGLSGGTAASSSSPA 1697
            |:.....|  |.|         .|.|....||           |...|...|..||        .
  Fly   215 NNQGGGFSGGPQNQQRDNRNRSGPRPGGGAGG-----------AMNSTNMGGGGGG--------G 260

  Fly  1698 ANSGPTKGLQYPFPSHPPLPNTAAPPPAVQPAPPPLPEMGKQSRLTGQSS---GN---------- 1749
            ...||..|..:.....  |.:.:.|...::|.     |:..:::.:|::.   ||          
  Fly   261 GGGGPRGGEDFFITQR--LRSISGPTFELEPV-----EVPTETKFSGRNRLYVGNLTNDITDDEL 318

  Fly  1750 ---------------NLTKS---LSVPDGPQSSPARVQLQKSASVPGSTNVG-------APSSLS 1789
                           ||.|:   |.|...|.:..|:      .::.||...|       ||::  
  Fly   319 REMFKPYGEISEIFSNLDKNFTFLKVDYHPNAEKAK------RALDGSMRKGRQLRVRFAPNA-- 375

  Fly  1790 LDSTTASVETSASISSSTSNGNSSLTSAAIHVQKP-QQSTFVEEEHTKKSGTSTSQSSSSSSKKI 1853
                     |...:|:.|...::.|...:..:..| ::::...::..|..|....:.:..||   
  Fly   376 ---------TILRVSNLTPFVSNELLYKSFEIFGPIERASITVDDRGKHMGEGIVEFAKKSS--- 428

  Fly  1854 SSTHDKLHSKHNNRSESDKKIKKSDKNASSSDKRKNSSTSQSSKSATPRIEDDSSEADDTADKAE 1918
                                       ||:..:..|......:.|..|.:.|.....|||....|
  Fly   429 ---------------------------ASACLRMCNEKCFFLTASLRPCLVDPMEVNDDTDGLPE 466

  Fly  1919 KNQRHEKEKKERQEKREKDLR----KQVEREEKDRKAQQEEREKEDRKAKEEEKEREREK-KAQE 1978
            |  ...|:..:..::|....|    ...|.|...|..|.....|..:.|.:.|.:.|.:| :||.
  Fly   467 K--AFNKKMPDFNQERSIGPRFADPNSFEHEYGSRWKQLHNLFKTKQDALKRELKMEEDKLEAQM 529

  Fly  1979 DREKKEREERELREKEQRDKEQKEKEIREKDLREKEQRERDNREKELRDKDLREKEMREKEQREK 2043
            :..:.|:|...||::.::.:...|::..|.::|||:..|...||:|...:...|.:.....|.|.
  Fly   530 EYARYEQETELLRQELRKREVDNERKKLEWEMREKQAEEMRKREEETMRRHQTEMQSHMNRQEED 594

  Fly  2044 ELHREKDQREREHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMD-IAGEASSLTAIDCQHNKE 2107
            .|.|   |:|....:.:|....:| :|||.||.    .....|..| .||.::|...:...:|..
  Fly   595 MLRR---QQETLFMKAQQLNSLLD-QQEGFGGG----GGGNNSTFDNFAGNSNSPFEVFRGNNNN 651

  Fly  2108 NAMDTIAQGTPGASPSTPSDNTPKERSRKLSR-NSPV 2143
            |              ||...|.....::::.| :.|:
  Fly   652 N--------------STMIGNNAAPNTQEIKRLDGPI 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spenNP_722615.1 RRM2_SHARP 555..628 CDD:240795
RRM3_SHARP 654..726 CDD:240796
RRM4_SHARP 727..803 CDD:240797
RILP-like 1997..>2055 CDD:304877 16/57 (28%)
SPOC 5404..5527 CDD:285043
nonANP_727962.1 RRM1_p54nrb_like 301..371 CDD:240778 12/75 (16%)
RRM2_p54nrb_like 377..456 CDD:240779 14/108 (13%)
NOPS_NONA_like 447..546 CDD:240580 25/100 (25%)
GBP_C <508..613 CDD:303769 28/107 (26%)
coiled coil 584..595 CDD:293879 2/10 (20%)
coiled coil 603..613 CDD:293879 1/9 (11%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45459923
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23189
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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