DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spen and nono

DIOPT Version :9

Sequence 1:NP_722615.1 Gene:spen / 44205 FlyBaseID:FBgn0016977 Length:5560 Species:Drosophila melanogaster
Sequence 2:NP_963873.1 Gene:nono / 321994 ZFINID:ZDB-GENE-030131-713 Length:441 Species:Danio rerio


Alignment Length:494 Identity:104/494 - (21%)
Similarity:174/494 - (35%) Gaps:114/494 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly  1699 NSGPTKGLQYPFPSHPPLPNTAAPPPAVQPAPPPLPEMGKQSRLTGQSSGNNLTKSLSVPDGPQS 1763
            |.||....|    :|.|            ....|.|:..:|.:.||..|....|.:     |.||
Zfish     4 NRGPRSEQQ----NHGP------------QRQQPNPQQEQQRKPTGADSNGQHTDA-----GEQS 47

  Fly  1764 SP---ARVQLQKSASVPGSTNVGAPSSLSLDSTTASVETSASISSSTSN-GNSSLTSAAIHVQKP 1824
            ||   ..:.|| :...||.......|.|.:.:..|.. |...:....|. |.:|    .|.:.|.
Zfish    48 SPNAGFTIDLQ-NFKKPGEKTYTQRSRLFVGNLPAGT-TEEDVEKLFSKYGKAS----EIFINKD 106

  Fly  1825 QQSTFVEEEHTKKSGTSTSQSSSS--SSKKIS---STHD-KLHSKHNNRSESDKKIKKS------ 1877
            :...|:..|....:..:.::...:  ..::|.   :||. .|..|:..:..|::.::::      
Zfish   107 RGFGFIRLETKTLADIAKAELDDTIFRGRQIRVRFATHGAALTVKNLPQFVSNELLEEAFSMFGP 171

  Fly  1878 ---------DKNASSSDKRKNSSTSQSSKSATPRIEDD-----------SSEADDTADKAE---- 1918
                     |:...:.......:...|::.|..|..|.           :.|..:..|:.|    
Zfish   172 IERAIVIVDDRGRPTGKGIVEFANKPSARKALDRCGDGAFLLTAFPRPVTIEPMEQLDEEEGLPE 236

  Fly  1919 ----KNQRHEKEKKERQEKREKDLRKQVEREEKDRKAQQEEREKEDRKAKEEEKEREREKKAQED 1979
                ||..:.|                 |||:..|.||....|.|.....:...|.|:::..|.|
Zfish   237 RLINKNPVYHK-----------------EREQPPRFAQPGSFEYEYAMRWKALMEMEKQQYEQVD 284

  Fly  1980 REKKEREERELREKEQRDKEQKEKEIREKDLREKEQRERDNREKELRDKDLREKEMREKEQREK- 2043
            |..||.:|:...|.|....|.:...:|:..||.:|:..|           :.|...:|.::|:: 
Zfish   285 RNIKEAKEKLETELEAARHEHQVMLMRQDLLRRQEELRR-----------MEEAHSQEVQKRKQM 338

  Fly  2044 ELHREKDQREREHREKEQSRRAMDVEQEGRGGRMRELSSYQKSKMDIAGEASSLTAIDCQHNKEN 2108
            ||.:|:::|.||...:..|...|. .|:|:||...|... ...:|.:.|:...:.......|..|
Zfish   339 ELRQEEERRRREEELRAHSEELMR-RQQGQGGNFSEKRD-PDMRMHMGGQGMGMNRNPMGGNASN 401

  Fly  2109 AMDTI-------AQGTPGASP-----STPSDNTPKERSR 2135
            ...|.       |.|.||..|     ..|:|....:|.|
Zfish   402 TGSTNLTSNEQGASGNPGGLPLPFPRPGPNDFGANKRRR 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spenNP_722615.1 RRM2_SHARP 555..628 CDD:240795
RRM3_SHARP 654..726 CDD:240796
RRM4_SHARP 727..803 CDD:240797
RILP-like 1997..>2055 CDD:304877 13/58 (22%)
SPOC 5404..5527 CDD:285043
nonoNP_963873.1 RRM_SF 71..141 CDD:302621 12/74 (16%)
RRM2_p54nrb 147..226 CDD:241035 9/78 (12%)
NOPS_p54nrb 217..310 CDD:240582 25/109 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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