DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spen and snrp-27

DIOPT Version :10

Sequence 1:NP_722615.1 Gene:spen / 44205 FlyBaseID:FBgn0016977 Length:5560 Species:Drosophila melanogaster
Sequence 2:NP_001369953.1 Gene:snrp-27 / 172652 WormBaseID:WBGene00011035 Length:155 Species:Caenorhabditis elegans


Alignment Length:328 Identity:61/328 - (18%)
Similarity:100/328 - (30%) Gaps:133/328 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 ELSSELGRGKFGVVYKCKEKSTGVRLAAKFIQIVKKG-----DRRNIEREVHMMNVLHHSKIAQL 94
            :|.||..||..|               :||:..:.|.     |:...||:::::..|        
 Worm   239 DLDSEFNRGAPG---------------SKFLNYLNKNIMPAFDQLPEERKLNLLRAL-------- 280

  Fly    95 YAAYEFDRTFCVMMELSSTDRPNGDGAIVSIDLNTPTLTFVLLPSLYFNQRGGRRTVRSSAGRKY 159
                         .|:|              ...|..:...:|||:.            ...:||
 Worm   281 -------------AEMS--------------PYTTAQVARQILPSIV------------QLLKKY 306

  Fly   160 DPDNKLQVLFGTPEFVAPEVVNFEAISFATDMWSVGVIAYVL--VSGLSPFAGEDDIQTMGNITI 222
            .|..|           ..|.:||..:.         .:.|||  ::..:|.|        .|...
 Worm   307 MPARK-----------TGEEMNFTYVE---------CLLYVLHHLAHKAPNA--------TNSLC 343

  Fly   223 GRYDFLDEAFDNVSEEAIDFINRCLVKEQKERLTAEDALKHKWIKRKPQ---YHPTNRRPSLTNS 284
            |......:..|.:.|:..:|     .||..||||:.:.|....:|:..|   .|......:.|:.
 Worm   344 GYKIVTGQPSDRLGEDFSEF-----NKEFTERLTSVEDLTKATMKKLTQGMSEHSKAMSTAKTDE 403

  Fly   285 FKPIL----------LESNNNSSNVTVGDKHDSSRIRNPLVPLHTHK----WNESLSLCSLQNTE 335
            .|.|:          |.:.||...:|.|              ||...    .|.|::|...:.|:
 Worm   404 EKSIVKTKKQSTTTGLRTCNNILAMTKG--------------LHAKAPSFIGNTSVTLSWKEPTK 454

  Fly   336 IAK 338
            :.|
 Worm   455 VTK 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spenNP_722615.1 RRM2_SHARP 555..628 CDD:409785
RRM3_SHARP 654..726 CDD:409786
RRM4_SHARP 727..803 CDD:409787
PTZ00121 <1912..2109 CDD:173412
DDRGK 1998..>2072 CDD:370664
Atrophin-1 3577..>3804 CDD:460830
petO 4587..>4709 CDD:438570
Atrophin-1 5107..>5374 CDD:460830
SPOC_SHARP 5399..5560 CDD:439206
snrp-27NP_001369953.1 SNRNP27 100..154 CDD:462548
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.